Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05805 ATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCACGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACGGCGGAGAACCGTGGTGGCTTGCGCCGGAGTGTGCCGCACCTGGAGGCTCATCATCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTTTAGCTGCGCGAAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATGCAGATGATATGTCCAGGGAAAGTAATGCCTACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTACGATAGCCAACTGCCTCATGCAAGGGCAAAGATGACAAAAAGCTGCTCCACCAAGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTATAGGCAACTACCCAGTTGCCCATGTCTCATATGAATTGAATGTATTAGGCTCCAGGGGGCCAAGGAGGATGCATTGTGTCATTGATAGCATTCCTGCTTCTGCTATTGAACCAGAATGGGTAGCTCCTTCACAGACCAGTTATTCTGTTAGTAACATAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATATGGAAAACTCCATATCTGGAGAGCAGAACAATAAAACAGATGACGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCATGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACGGTTGCTTCAGTCAAAAACTTTCAGCTGGCTGCTTTGCCAGTAAATGGACATGCTGAACCACAAGAGGATGATGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGATACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACGGTTGCTTGTGAATGA 1083 0.4681 MDDGLEQSWWANMPHELLREVLLRIESSEAKWPRRRTVVACAGVCRTWRLIIKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDADDMSRESNAYIGKLRSNFLGTKFTIYDSQLPHARAKMTKSCSTKLVNPKQVSPKVPIGNYPVAHVSYELNVLGSRGPRRMHCVIDSIPASAIEPEWVAPSQTSYSVSNIGTSFPFFQTNSTHMENSISGEQNNKTDDVLVLRNKAARWHEQMQCWCLNFHGRVTVASVKNFQLAALPVNGHAEPQEDDVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05805 360 Gene3D Tubby Protein; Chain A 69 360 IPR025659 -
Viun3g05805 360 Pfam F-box domain 10 56 IPR001810 GO:0005515
Viun3g05805 360 Pfam Tub family 71 355 IPR000007 -
Viun3g05805 360 CDD F-box_AtTLP-like 10 54 - -
Viun3g05805 360 FunFam Tubby-like F-box protein 67 360 - -
Viun3g05805 360 PANTHER TUBBY-RELATED 7 357 - -
Viun3g05805 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Viun3g05805 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Viun3g05805 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Viun3g05805 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Viun3g05805 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Viun3g05805 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Viun3g05805 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Viun3g05805 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Viun3g05805 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Viun3g05805 360 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05805 Viun-Chr3 63175869 63178501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05805 3 360 TUB Transcription Factor Family AT2G47900 65.289 1.22e-174 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun3g05805 Tub 3.2e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05805 K19600 - gmx:100794141 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05805 3 63175869 63178501 Viun3g05805 3 63175869 63178501 ECH
Viun3g05805 3 63175869 63178501 Viun6g02460 6 29522504 29527332 PCT