Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05799 ATGCAAGGTCGAATTACGAAAAAGGAAACTGAAACTCACTCTACCATGCCACCACTCTCTCAAATCCCACCTTCTTCTTCTTCTTCTTTTCCTCACCCTTCAAGCATTGCTGAAGCAACTGCTAACACCACCACCACCAGAAAGCGTGTTAAGAGAATGGTTCACTCCCATTGTGGGAGCATTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCGGTCCCTGGTCTCTTACCTCAGGCTACGAGAGAAGTGATAGTAAACGAGACAATTGGGTACATAAAAGAGCTTGAGAAGAAGAAGCAGAGGTTGGAGGAGTTGAAGAAGTTGAAGGAGACTGTGAAAGGAGTGGAAGGATCCACGGTTGAATGTGGTAACAATAATAGAGATTGTTCAATCGTGGTTACTGTTTCTGCTAATGTTGCATTCTTTGGTATTCAATGGGTGCCTCGACCAGGTTTGGTGGCACAGATTTTCAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCCATCACAGCTTCGGTGCAAAATAATGGAAACTGTGTGGTTGAAAAGATTAAGAGAGAAATTATGGGTTTGTAG 648 0.4275 MQGRITKKETETHSTMPPLSQIPPSSSSSFPHPSSIAEATANTTTTRKRVKRMVHSHCGSINMERERRSKMTQMFTQLQTSVPGLLPQATREVIVNETIGYIKELEKKKQRLEELKKLKETVKGVEGSTVECGNNNRDCSIVVTVSANVAFFGIQWVPRPGLVAQIFKVFCNHQAEILAANVTVNNGKLILAITASVQNNGNCVVEKIKREIMGL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05799 215 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 38 204 IPR044278 GO:0003700|GO:0006355|GO:0009960
Viun3g05799 215 Pfam Helix-loop-helix DNA-binding domain 63 106 IPR011598 GO:0046983
Viun3g05799 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 105 IPR011598 GO:0046983
Viun3g05799 215 MobiDBLite consensus disorder prediction 1 49 - -
Viun3g05799 215 Coils Coil 95 125 - -
Viun3g05799 215 SMART finulus 61 111 IPR011598 GO:0046983
Viun3g05799 215 Gene3D - 41 133 IPR036638 GO:0046983
Viun3g05799 215 MobiDBLite consensus disorder prediction 12 47 - -
Viun3g05799 215 SUPERFAMILY ACT-like 158 212 IPR045865 -
Viun3g05799 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 116 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05799 32 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.384 7.56e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g05799 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05799 - - gmx:102670256 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05799 3 63144062 63145307 Viun3g05799 3 63144062 63145307 ECH