Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05793 ATGGGGAGGCCCTCCAAGACGCAGGTTTCCAACGACTCAACCTCCGATGAAGAGGAGGAGGAGGAAGTCGCCGCCGACAACCACCAGATCGAAGACGACGACGAGGAACTTGAAGCGGTGGCGCAATCTGCAAGCTCCGACGACGACGATAACTCTCCGGACGAAGCCGCCGATGACGACGATGATAACAAACAGGATGAGAGTAATGTTGATTCTGAAGTTAGCAAGCGCGAGAAGGCCAGATTGAAAAAAATGCAACAGTTGAAGAAACAGAAGGTTCAGGAGATATTGGATGCTCAAAACGCGACCATTGATGCTGACATGAATAATAGAGGAAAGGGCCGATTGAAGTATCTCCTCCAGCAAACTGAACTGTTTGCCCATTTTGCTAAGGGTGATCAATCTTCTCAAAAGAAGACAAAAGGAAGGGGTCGCCATGCATCAAAGGTCACCGAAGAAGAGGAAGATGAAGAATACCTGAAAGGGGAAGAAGATGGTTTAGCAAACACCCGGCTGGTGTCTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGTCTAAACTGGCTAATACGATTGTATGAGAATGGTATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGAAAAACCTTGCAAACTATATCTTTGTTGGGCTACTTACACGAGTTCAGAGGAATAACAGGGCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGTCGCTTCTGCCCTGTTTTACGTGCTATAAAGTTCCTTGGCAATCCTGATGAAAGGAAGCACATAAGAGAAGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCCCTACGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCACATCGAATCAAGAACGAGAATTCTCTCCTGTCAAAAACAATGAGATTATACAACACAAACTATCGTCTTCTCATTACTGGCACACCACTACAGAATAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATGAACAAGAAGTTGTTCAACAACTGCACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGTTACCACCAAAAAAGGAAACCATTCTCAAGGTAGGCATGTCACAAATGCAAAAACAGTATTATAAGGCATTACTTCAGAAGGATCTGGAGGTGGTCAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCGATGCAACTACGAAAATGTTGTAATCACCCGTATCTCTTTCAAGGTGCTGAACCTGGTCCTCCCTTTACAACAGGAGACCATCTCATCACAAATGCTGGCAAGATGGTTCTTCTGGATAAGTTACTTCCAAAACTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTTATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAATTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCCTGTTATCTACTCGGGCAGGAGGACTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGCGACTGGAACCCTCAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGAATTGGCCAAAAAAAAGAAGTTCAAGTTTTTCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTAGCTGAACAGAAGACTGTAAATAAAGACGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTGTTTAGTTCCAAGGACAGTACTATTACAGACGAAGATATTGACAGAATTATAGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACGGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAAAACAAATTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCACCAAGAAGAGAACGGAAGCGCAATTATTCAGAGTCTGATTATTTCAAGCAAACAATGCGCCAAGGTGCTCCAACTAAACCTAAAGAGCCACGCATACCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTACCTCATGCAAACACATCAGAAGAATCAGTTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTTGGAGATCCATTAACTGCTGAAGAGTTAGAAGAGAAGGAGCAGTTGCTTGAAGAGGGATTTTCGTCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACGCAAGAGGAGGTTGAAAGATATGCAAAAGTTTTCAGAGAAAGATACAGGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGTGAGGCGAGAATAACCCGGAAAGATGAAATCATGAAAGCCATTGGGAAGAAGTTGGACCGCTATAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAACGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGTATGTCTCCCTTATTTCGTTTTGATTGGTTTGTGAAGTCTCGCACAACACAAGAACTTACAAGGAGGTGTGACACTCTCATTCGACTGGTGGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTGGCGGCTAAGAGCATGACCCCGTCGAAGCGTTCCATGTCTAGACAGAACGAGAGTCCCTCTTTGAAGAAGAGGAAACAGTTAACGATGGATGACTATTTAAGCTCGGGGAAGAAGAAAAAATAA 3177 0.4152 MGRPSKTQVSNDSTSDEEEEEEVAADNHQIEDDDEELEAVAQSASSDDDDNSPDEAADDDDDNKQDESNVDSEVSKREKARLKKMQQLKKQKVQEILDAQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESDYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFRERYRELNDYDRIIKNIERGEARITRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMSRQNESPSLKKRKQLTMDDYLSSGKKKK 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05793 1058 CDD DEXHc_SMARCA1_SMARCA5 180 400 IPR044754 GO:0005524
Viun3g05793 1058 FunFam Chromatin-remodeling complex ATPase 184 399 - -
Viun3g05793 1058 MobiDBLite consensus disorder prediction 1005 1058 - -
Viun3g05793 1058 MobiDBLite consensus disorder prediction 131 161 - -
Viun3g05793 1058 FunFam ISWI chromatin-remodeling complex ATPase CHR11 735 833 - -
Viun3g05793 1058 MobiDBLite consensus disorder prediction 14 67 - -
Viun3g05793 1058 Pfam Helicase conserved C-terminal domain 486 598 IPR001650 -
Viun3g05793 1058 SMART sant 834 883 IPR001005 -
Viun3g05793 1058 SMART sant 936 997 IPR001005 -
Viun3g05793 1058 Gene3D - 922 1025 - -
Viun3g05793 1058 Pfam HAND 747 830 IPR015194 GO:0003677|GO:0006338|GO:0031491
Viun3g05793 1058 Pfam SNF2-related domain 196 463 IPR000330 GO:0005524|GO:0140658
Viun3g05793 1058 MobiDBLite consensus disorder prediction 1005 1022 - -
Viun3g05793 1058 MobiDBLite consensus disorder prediction 1034 1058 - -
Viun3g05793 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 681 IPR027417 -
Viun3g05793 1058 Coils Coil 82 102 - -
Viun3g05793 1058 Gene3D iswi atpase 889 921 - -
Viun3g05793 1058 Gene3D - 404 696 IPR027417 -
Viun3g05793 1058 FunFam ISWI chromatin-remodeling complex ATPase CHR11 404 696 - -
Viun3g05793 1058 MobiDBLite consensus disorder prediction 1 87 - -
Viun3g05793 1058 SMART ultradead3 179 371 IPR014001 -
Viun3g05793 1058 SMART helicmild6 514 598 IPR001650 -
Viun3g05793 1058 Pfam SLIDE 891 1001 IPR015195 GO:0003677|GO:0005634|GO:0006338
Viun3g05793 1058 MobiDBLite consensus disorder prediction 134 155 - -
Viun3g05793 1058 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 746 836 IPR036306 GO:0003677|GO:0006338|GO:0031491
Viun3g05793 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 360 IPR014001 -
Viun3g05793 1058 Gene3D - 834 888 - -
Viun3g05793 1058 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 89 1041 - -
Viun3g05793 1058 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 639 IPR001650 -
Viun3g05793 1058 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 834 888 - -
Viun3g05793 1058 Gene3D - 184 399 IPR038718 -
Viun3g05793 1058 SUPERFAMILY Homeodomain-like 837 887 IPR009057 -
Viun3g05793 1058 FunFam ISWI chromatin-remodeling complex ATPase CHR11 922 1026 - -
Viun3g05793 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 398 IPR027417 -
Viun3g05793 1058 CDD SANT 837 878 IPR001005 -
Viun3g05793 1058 Gene3D ISWI, HAND domain 735 833 IPR036306 GO:0003677|GO:0006338|GO:0031491
Viun3g05793 1058 ProSiteProfiles SANT domain profile. 833 885 IPR017884 -
Viun3g05793 1058 Coils Coil 984 1018 - -
Viun3g05793 1058 SUPERFAMILY Homeodomain-like 889 1011 IPR009057 -
Viun3g05793 1058 CDD SF2_C_SNF 484 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05793 Viun-Chr3 63118172 63127253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05793 204 625 RAD5 or RAD16-like Gene Family AT1G02670 27.327 1.17e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g05793 SNF2_N 1.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05793 K11654 - gmx:100791510 1964.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05793 3 63118172 63127253 Viun3g05793 3 63118172 63127253 ECH
Viun3g05793 3 63118172 63127253 Viun6g02473 6 29579468 29586486 PCT