Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05785 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGATCCCAACCAAACCCAAATGTGTCTCTCTCTTCTCCAACGCAACACTTCTCCTTGTGGTGAAAAAAGAGGCAGAAGGAAGCAAGCAGAGCCAGGAAGGTTCCTCGGGGTCAGAAGACGCCCTTGGGGTCGATATGCTGCTGAAATCAGAGACCCCACAACCAAAGAAAGACATTGGCTTGGCACCTTCGACACTGCTCAGGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTCTCCATGAAAGGAACACAGGCAAGAACCAACTTTGTTTACTCCGACAACATCAACTTCCACACTACACTTTCTCCTGAGGATGTTCAACTCCAACTTCAACTTCAACTCCAACCTCTCCTCCCACCTTCACAGTTCCTCACCAACACCACTCACACAAAACAACCAAACAACCACCAGAATACCCTCGTTCACACTTCAAACTGTGGAAACCCCTCCCCATTGAACAATGACGTCGCGTGTGTTGAAATTGAAACTTCAGATAGTTTCTTCTTTTCCAGTGATTCTAACTCGGGCTATCTGGAATGCATTGTTCCTGATAACTGTTTCAGACCTTCTGCTTCTGCTTCCGGTTCCTCCAGAAGCAACAGTTCAAACTCCAGAAAGAGCGATGTGAGCGATCAAAAGGCTCACACAAACTACTCCATTGAGAGTACTAATCATCATCATCATGATCAGCAGCAGCAGCAGCAGAAGCAGTACCCACATGCTGACATGAGTTCATTCTCTCAAGAAATGGCAGCAAGGGGTTCTAACTTTTCAGAGTTTTGTTATCCAAGTGAAGTGAGTCAAGGATCATGGGATGATCAACAGTCATGGGATTGGAACTGCAGTGAACTTTCAGCCATATTTAAGAACCCATTAAGGGTGGAAAATGGGTGCATGGATGCAATGTACCACCACCCCATCATGAGTGATGATGATCAGAGTGGAAGCTATGGAGTAATGAATAATGAGGGTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1086 0.4613 MSTSRTSDTPFKGYDPNQTQMCLSLLQRNTSPCGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGTQARTNFVYSDNINFHTTLSPEDVQLQLQLQLQPLLPPSQFLTNTTHTKQPNNHQNTLVHTSNCGNPSPLNNDVACVEIETSDSFFFSSDSNSGYLECIVPDNCFRPSASASGSSRSNSSNSRKSDVSDQKAHTNYSIESTNHHHHDQQQQQQKQYPHADMSSFSQEMAARGSNFSEFCYPSEVSQGSWDDQQSWDWNCSELSAIFKNPLRVENGCMDAMYHHPIMSDDDQSGSYGVMNNEGASSTTCSPSLPPFGDVDLGYPLF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05785 361 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Viun3g05785 361 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Viun3g05785 361 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Viun3g05785 361 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Viun3g05785 361 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Viun3g05785 361 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 254 - -
Viun3g05785 361 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Viun3g05785 361 MobiDBLite consensus disorder prediction 137 161 - -
Viun3g05785 361 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Viun3g05785 361 MobiDBLite consensus disorder prediction 205 233 - -
Viun3g05785 361 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Viun3g05785 361 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Viun3g05785 361 MobiDBLite consensus disorder prediction 205 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05785 Viun-Chr3 63058623 63060225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05785 1 208 AP2-EREBP Transcription Factor Family AT5G18560 45.174 1.91e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g05785 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05785 - - gmx:100812047 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05785 3 63058623 63060225 Viun6g02480 6 29645720 29646953 PCT