Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05784 ATGGAGCGGTACGGCCGGGCCAGCGAGGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGCGGCCGGCGCCGACGCCGGCATCGAAGAGTCCTCGTGGCAACACGGATTGGCAGCTGCCGAATCGTACCCTCTGCGACCCGATGAGGCTGATTGTATCTACTATTTGAGGACGGGATTTTGCGGTTACGGGACACGGTGTCGTTTCAACCATCCTCGTGACCGTGCTGCGGTCATTGGAGCTGCGGCGAGGACCGGAGGGGAGTTTCCAGAGCGCGTGGGGCAGCCTGTGTGCCAGTACTACATGAGGACGGGATCATGCAAGTTTGGTGCATCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCGCTGCCACTCCTGTGCCACTAAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAATTTGGTGCAACTTGTAAATTCCACCATCCCCAGCCTGCAGGTGTCCAAGTTATTGCACCATCACCGGTTCCCTCAGTTTCACATCTGCCTGTACCGGTACCTTCACCAGTATATCCAACTGTACAGCCCCAATCTGGTCCTTCGCAGCAACAATATGGTGTACTTGTTGCAAGGCCACCTATGCTACCCGGCTCAGTAGTTCAGGGTCCGTATGGGCCTATGGTAGTGTCTCCTGCCATGGTCCCTTTTTCAGGTTGGGGTCCTTATCAGGCTCCTGCAACAACCCCTGTAATGCCATCTAGCTCTGCGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCGCTACCTTCGTCCGCAGCTACTTTTACTGCACCTTATCAGCCTTCTGGTTCCTCAGTCGGTCCTTCAGCTGCTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCAGAATGTCATTACTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCTTGCAGATATCATCATCCACCAGACAAGGGTGCACCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCGCCTTGCACTCACTATACACAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTTAGTTATAGTCCATCTGCGTCTTCCCTTGCCGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATCGGCACTCTTGCTCCGTCATCTTCATCATCGGAGTTGCGGCCTGAACTTGGTGCAGGAGTGAGTAAGGAGTCTGTTTCGTCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTCGGACCCATTTCTCAATCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACCACAAGTGCTACTACCACAAGTAGCACTGTCTCTCATACCTCAAGCTAA 1455 0.5237 MERYGRASEGSQSDPSPEWTAAGADAGIEESSWQHGLAAAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGAATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVIAPSPVPSVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATTPVMPSSSASNVGSTQLYGITPLPSSAATFTAPYQPSGSSVGPSAAIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGVSKESVSSRMSSMSTSTGSVGLTLSSVGPISQSSTQPSAQSSSSSATTSATTTSSTVSHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05784 484 MobiDBLite consensus disorder prediction 405 484 - -
Viun3g05784 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Viun3g05784 484 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Viun3g05784 484 Gene3D - 127 175 - -
Viun3g05784 484 Gene3D - 46 126 - -
Viun3g05784 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Viun3g05784 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Viun3g05784 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Viun3g05784 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 377 IPR000571 GO:0046872
Viun3g05784 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Viun3g05784 484 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Viun3g05784 484 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g05784 484 SUPERFAMILY CCCH zinc finger 307 332 IPR036855 GO:0046872
Viun3g05784 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Viun3g05784 484 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Viun3g05784 484 PANTHER PROTEIN PHOSPHATASE RELATED 30 412 - -
Viun3g05784 484 Gene3D - 304 381 - -
Viun3g05784 484 FunFam CCCH type zinc finger protein 302 387 - -
Viun3g05784 484 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Viun3g05784 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Viun3g05784 484 MobiDBLite consensus disorder prediction 426 484 - -
Viun3g05784 484 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Viun3g05784 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Viun3g05784 484 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Viun3g05784 484 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Viun3g05784 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Viun3g05784 484 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Viun3g05784 484 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05784 Viun-Chr3 63050574 63055279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05784 1 449 C2H2 Transcription Factor Family AT5G18550 57.050 7.29e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g05784 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05784 - - gmx:100789405 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05784 3 63050574 63055279 Viun6g02481 6 29648794 29660848 PCT