Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05783 ATGAAGAAGTTCTCAACCCTAAGAATCCTTCACCATCGTCATTCTCTTCTCAATCTCAATCTCAATCTCAATCCACCATTCTCCGTCTGCTTCAATTTCAATTTCGCCACCGTTCCCCACTCTCACTCCTTCGTTGTCTCCTACCTCGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCCCGCTACCTCCGTTTCGAGAGTTCTCAGAAGCCCGACTCCGTCCTAGCGTTCCTCTCCACGCATGGCTTCTCCGTCTCTCAAATCCACACCATCGTCAAACGGGAATGTCGCATCCTCCGCTGCGACCCCGACAAGGTCCTCCTCCCCAAATTCCTCTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAACCCACATGATCACCACCGGACCCCGATTCCTCTTATCCAGCCTCGACAACCACATTGTCCCCGCCTATCTCTTGATCAAAAGTTTCGTCGACTCCGACAAGCAAGTCATCACCTGTCTCAGGCGAAACCTCTCCTTCATTGCCGACAATCGCGTATCTTCCAACGTCCAACTTCTCCTCGATAATGGCGTCAAACGCTCCAGCATCGCTATGATGTTCTCCATGTGGCCCTCTATCCTCTGCTCCTGTAACCTGTCCCACACTATTTCTGAATTGAAACAAATGGGGTTTGATACTTCCAAAACCTCCTTCGCCGTCGCCATGTTGGCCAAAAAGACTGTGAATAAAGCCAAGTGGGGCGACAAGGTTGAGGTTTTTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGTGGCGTTTAAGAAGCAACCTTATTGCATGTTGACCTCCTGTGAGAAGATTGATGCCATGTTCAGCTTCTGGGTTGAGGTGTTAGGGTATAGCTCTTTGGAGCTTATCAAGTATCCTGTTATTTTTCAGATGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGGTTTCTTGACAAGGAAGGATTGAGGAAAAAGGGTGCAAGCAATGGCACGCCTCTACTCACGACGGAGAATGTGTTTCTGAAGAAGTTTGTGTATTGTTTTGAGAAACATTCTTCTCAGTTGTTGAAGATATATGAGAAAAGTTTGAATGAAGGGAATCCTGGGTGA 1134 0.4947 MKKFSTLRILHHRHSLLNLNLNLNPPFSVCFNFNFATVPHSHSFVVSYLVSTCGFSPESALSASRYLRFESSQKPDSVLAFLSTHGFSVSQIHTIVKRECRILRCDPDKVLLPKFLFLRSKGASSADITHMITTGPRFLLSSLDNHIVPAYLLIKSFVDSDKQVITCLRRNLSFIADNRVSSNVQLLLDNGVKRSSIAMMFSMWPSILCSCNLSHTISELKQMGFDTSKTSFAVAMLAKKTVNKAKWGDKVEVFKKWGWSEEHVLVAFKKQPYCMLTSCEKIDAMFSFWVEVLGYSSLELIKYPVIFQMSLPKRIVPRSLVLRFLDKEGLRKKGASNGTPLLTTENVFLKKFVYCFEKHSSQLLKIYEKSLNEGNPG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05783 377 Gene3D Transcription termination factor 3, mitochondrial 145 362 IPR038538 -
Viun3g05783 377 Pfam mTERF 79 180 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 Pfam mTERF 176 343 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Viun3g05783 377 FunFam Mitochondrial transcription termination factor-like 143 360 - -
Viun3g05783 377 PANTHER CGI-12 PROTEIN-RELATED 41 355 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05783 Viun-Chr3 63036165 63038507 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun3g05783 mTERF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05783 K15032 - gmx:100788877 358.607