Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05766 ATGGTGGACAACGTTGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATCAGGGAACAAGACCGTTTGCTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCAAAGGAATCGAAGGAAACAATGCAAGAGTGTGTGTCGGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGAAAGGAGAGAAGGAAGACCGTGAACGGAGATGATATATGCTGGGCCTTAGGGTCCCTTGGTTTTGATGACTATGCAGAGCCACTGAGAAGGTATTTGCACAGATATAGAGAACTTGAAGTAGATAGATCAGGAAATAGCCCCTCAAAAGACAAGGATGCTGAATTCTGA 381 0.4514 MVDNVGGSSSNPENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLHRYRELEVDRSGNSPSKDKDAEF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05766 126 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g05766 126 FunFam Nuclear transcription factor Y subunit B-3 12 125 - -
Viun3g05766 126 MobiDBLite consensus disorder prediction 1 17 - -
Viun3g05766 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Viun3g05766 126 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Viun3g05766 126 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Viun3g05766 126 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Viun3g05766 126 Gene3D Histone, subunit A 11 125 IPR009072 GO:0046982
Viun3g05766 126 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun3g05766 126 SUPERFAMILY Histone-fold 20 121 IPR009072 GO:0046982
Viun3g05766 126 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05766 Viun-Chr3 62948168 62948664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05766 17 113 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.351 1.64e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g05766 CBFD_NFYB_HMF 3.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05766 K08065 - gmx:100786046 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05766 3 62948168 62948664 Viun9g00200 9 1183724 1184660 PCT