Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05758 ATGAACACCATTCTCCGCCACCGTCTAAGGCTAAGTCCGACACCTATTCTGTACTGTTTCCCCTTATCCCTTTTTCCCCAACCCTTTCACTTTTTCTCAACAACCACTTCTGATCCCTGCGCCTTCACCTTATCCTATCTCACCAACACCTGCGGCTTCTCGCACGAGGTCGCACTTAAACTATCCAAACGACTTCGTTTCGAAAGCGCCGAAAAACCCGATTCCGTCTTCTCTTTCTTCCGAACCCACGGTTTCTCCGCCTCCCAGATCCACCGCATCTTCTACCAAGCCCCCGATCTCATGCTATGCGACCCCACCAAAAGGCTTCTCCCCAAATTCCAATTCTTAGCCGCTAAAGGCGCTTCTCCCTCCGACACCATTCTCACCGTCTCCAAGAGCCCCCGTTTCCTTCGTTACAGTCTCAACAACCATATCATCCCCATCTTCGAACTCATCCGAACCTTCTTGCCCTCCGACCTCAAAGCCCTCGCTGTTCTCATCGCCTGTCCCAATTTCATTGGAGACTCTCGTGTTGCCTCCAACGTTCAGTTGTTGCTCGATACCGGAGTAACGCACACCGGCATTCGCTACTTGCTCTGCTCTCGCCCTTCGGTTCTGTGCTCCGACCTGAGACCCGCTATTGAGGAAGTGAAGCTGTTGGGGTTTGAGCCTTTGAAGCTGAGCTTCGCTCTGGCGCTTCTGGCCAAAAGGGCTGTTTCGAAACCCCTTTGGGACGCCAAAGTCGACGCCTTGAAGAAATGGGGTTGGTCCGAGGATGATATTTTGGTTGCTTTTAGGAACCAGCCTAACGTTATGCTGCGCTCCAAGGAGAAACTTAATGCAGTGATGGGGTTTTGGGTTGGTCAGCTTGGTTGGGATTACACCGCGCTTATTTCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTTGCACCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGATTGGTGAAGAAAAGTGCTAGCTTGGTCACACCGTTTGGTATGTCTGATGAATTGTTTCTGCAAAAGTACGTGAAACGTTTCAAGGAGGAAACGCCCAGGTTACTAGAGCTATATCAGACAGCACAGGGAACATCCTAG 1116 0.509 MNTILRHRLRLSPTPILYCFPLSLFPQPFHFFSTTTSDPCAFTLSYLTNTCGFSHEVALKLSKRLRFESAEKPDSVFSFFRTHGFSASQIHRIFYQAPDLMLCDPTKRLLPKFQFLAAKGASPSDTILTVSKSPRFLRYSLNNHIIPIFELIRTFLPSDLKALAVLIACPNFIGDSRVASNVQLLLDTGVTHTGIRYLLCSRPSVLCSDLRPAIEEVKLLGFEPLKLSFALALLAKRAVSKPLWDAKVDALKKWGWSEDDILVAFRNQPNVMLRSKEKLNAVMGFWVGQLGWDYTALISSPTLFSYSLEKRVAPRALVVQYLLSKGLVKKSASLVTPFGMSDELFLQKYVKRFKEETPRLLELYQTAQGTS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05758 371 PANTHER CGI-12 PROTEIN-RELATED 42 354 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 Pfam mTERF 246 346 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 Pfam mTERF 78 214 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 Gene3D Transcription termination factor 3, mitochondrial 174 358 IPR038538 -
Viun3g05758 371 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 SMART mt_12 295 328 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Viun3g05758 371 FunFam Mitochondrial transcription termination factor-like 141 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05758 Viun-Chr3 62932482 62934351 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun3g05758 mTERF 9.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05758 K15032 - gmx:102666739 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05758 3 62932482 62934351 Viun3g05758 3 62932482 62934351 ECH
Viun3g05758 3 62932482 62934351 Viun9g00198 9 1171004 1172504 PCT