Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05742 ATGCAATTTCATTGTGATACGGATTCTCCACTTGTTGCCGCAGACACACATGTAGGCGACGCAAAACGCAACCAAATATATTTTCTTTCTCTGCCCTTTCGGGATTTGCTAAGTCACACACTCTCTTGTATATATACTCGCACTCTCACTCACTCCTTTTTCTCTTCTATCATACCCTCTCTCTCTCTTTCTCTTTGCCTTCCATCTTCACTTCCCCATCCATCTATTCGCTTCCTCACTGCGCAGGGTATAATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGCAACAGTGATAGAGGTATTCCCTGTGAGGTTGCCAGTGGCTGCAAAATCCTTCCTGGAGTACGTAGAACAAGTAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCGAATGCTACACTAGCCAACACAAACATCTGCAATGGTAAAATAGGTGAAGAAATCCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCATCTTCCCTCCCAAGTAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTACAAGTGACATCCTCGAATATGACTCTTGCACATTAAAATCCATGAGCGATCCTTCCAGAGGTGAAGGTTTTCTTAATGGTAAGGAAGTTCAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTATTCTGTGCAATTTATGATGGCTTTAATGGACGAGATGCAGCCGATTTTCTAGCCGGTACCCTGTATGACACCATCATATCATACTTTAATAAGTTAATAGAGGAATTGGAGCCAGGTTCCATCAGAGCTTATAATGATGGGGGCTTGGATGAATCCCTGCAATGTAAGTTGAATGACAGTCTTATTTATCACGAAGATCAATCTATGGCAAGATATAAAGGAATAAATGATTCTAATCATGGATGCTATGCAAAGTGTAGTCCATGTACTAAATCAGAACTATCATGTGATCCATTTTCACAAGGGATACTTGATATCCTTGAACGTGCTATTAGTCAGGCAGAGAATGATTTCCTTTACATGGTGGAGCGGGAAATGGAGGAACGTCCTGATCTAGTTTCTATTGGATCTTGTGTTTTACTAGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTTGGTGACAGCAGAGCAGTTTTGGCAACCTGCATTACAGGTTGCCGAATGGATAAGAGTGAGAGACTGAAGGCTATACAGCTTACAGATAATCACACTGTTGACAATGAAGTTGAAAGAGCTAGACTTCTGGCCGAACACCCCGATGATCCCAGGATCGTTATAGCAGGAAAAGTGAAAGGGAAACTGAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAATTTTGAATGATGCTTTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATACATATCCACTCAACCATCACTAAATGTCCATAGAATCTCAAGCTCCGATCAATTTGTGATAGTAGGAAGTGATGGTTTATTTGACTTCTTCAGCAACGATGAGGCTGTGAAGCTTGTAGAGTGTTATATCTTGAGCACCCCTTTTGGTGATCCAGCAAAGTTTCTGATTGAGCAGCTTGTGGCTAGAGCAGCTGTTTCTGCCGGTTTAAGCATGGAAGAGTTGATGAACATTCCAGCTGGAAGGAGAAGGAAGTACCATGACGATGTGACCGTGATTGTGATCATGCTTGGGATGAATCAACGCACTTCAAAGGCATCAACTTGCATTTGA 1827 0.4193 MQFHCDTDSPLVAADTHVGDAKRNQIYFLSLPFRDLLSHTLSCIYTRTLTHSFFSSIIPSLSLSLCLPSSLPHPSIRFLTAQGIMLSPEGELKISFGYKCNSDRGIPCEVASGCKILPGVRRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPSSLSYLSCSPSTTSDILEYDSCTLKSMSDPSRGEGFLNGKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFNKLIEELEPGSIRAYNDGGLDESLQCKLNDSLIYHEDQSMARYKGINDSNHGCYAKCSPCTKSELSCDPFSQGILDILERAISQAENDFLYMVEREMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCITGCRMDKSERLKAIQLTDNHTVDNEVERARLLAEHPDDPRIVIAGKVKGKLKVTRAFGVGYLKKKILNDALMGILRVRDLKSPPYISTQPSLNVHRISSSDQFVIVGSDGLFDFFSNDEAVKLVECYILSTPFGDPAKFLIEQLVARAAVSAGLSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05742 608 CDD PP2Cc 233 593 IPR001932 -
Viun3g05742 608 SUPERFAMILY PP2C-like 234 596 IPR036457 -
Viun3g05742 608 PANTHER PROTEIN PHOSPHATASE 2C 228 593 IPR015655 GO:0004722|GO:0006470
Viun3g05742 608 SMART PP2C_4 211 593 IPR001932 -
Viun3g05742 608 Pfam Protein phosphatase 2C 367 546 IPR001932 -
Viun3g05742 608 ProSiteProfiles PPM-type phosphatase domain profile. 221 595 IPR001932 -
Viun3g05742 608 Gene3D - 190 604 IPR036457 -
Viun3g05742 608 FunFam Probable protein phosphatase 2C 40 201 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05742 Viun-Chr3 62839579 62843134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05742 88 608 PP2C-type Phosphatase Gene Family AT3G16560 62.429 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05742 - - vun:114178627 1145.95