Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05740 ATGCAGAACGAGGAGGGAAAACTCACTGAGTTATACGTTCCTAGGAAATGCTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTACAATGGTCATTTTTCCACGTTTGCTCTCTGTGGCTTCGTTCGAGCACAGGGTGATGCTGACAGTGCACTAGACAGGTTGTGGCAGAAGAAGAAGCCAGAAGTTAAACAACACTAG 249 0.4578 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQINIGHLDENGIYNGHFSTFALCGFVRAQGDADSALDRLWQKKKPEVKQH 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05740 82 Gene3D - 1 80 IPR038579 -
Viun3g05740 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Viun3g05740 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Viun3g05740 82 FunFam 40S ribosomal protein S21 1 81 - -
Viun3g05740 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Viun3g05740 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05740 Viun-Chr3 62811216 62812637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05740 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.707 1.80e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05740 K02971 - gmx:100817753 161.77