Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05732 ATGGAGGAGCCTCAGTATCGGGAGCATCCCAAAACCAAAATCGCCGCCATTCCGCCGCCGCAGCACTCCGACGGAGCCTCCGCGGAGTTGCGCGGCGTCGATTGCAACCTCGCTTCCCTTTGCGAGCATGTCCAAATCGAAGGCTTCAATTCGGGTTCCTTCTCCGACATCGTCGTCAATGCAATGGGTTCCACTTATCACCTTCATCGGCTTATCCTCTCGCGTAGTTCCTATTTCAGGAACATGCTTCACGGGCCTTGGAAAGAAGCCAGTGCTCCTGTTGTGACTCTGCATGTTGATGATAAGAATGTTAATGACGAGGCAATTGCAATGGCGTTGGCGTACCTATACGGGCACCACCCTAAGCTTAATGATAGTAATGCTTTTCGTGTTCTTGCTGCTGCATCCTTTCTCGACCTTCAGGATTTATGTGGAATTTGTACAGATTTCATTATTTCTGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGCTGGGGTTACCTTTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCGCAAACATTACATGCATTACTGACTTCTAATGATCTATGGATACCCAATGAAGAGAAAAGGTTTGAATTGGCTTTGCACACATTCCTGGCAAAAGGTGCTCATTGCAAGGTTGAACATCTTTCGCATGGAATTTCTGGTTCTGAGTCTGCCACTGGTATTCATGCTGATTCTATTAACAGCAAGGGAAAAAGTGTAATTGATAGCTGCACTACTAAGAGGTTGGAAACTGACCTTGGAAAAATGAATCTTAAAAGTGGTTTAAAGGACCCGAGCACTTCAAGTGTTCTAGTTGAGCTTGCAGATCCAGTGGCAGACTTCAACGATGGTGTTTCTGTTTCCAATGAACAGGTTCAACAAGCTTCATATGTCCGTACACCAAACCTGAATCCAAGATATTCTGGTGACATGGAAGGACCATCATTGGGTAATTCATTGCCTGATACAGATGTGATGACAACATCATGCTATGTGGACATGCCTCTTGGTGCAGAAGCTACAGCTATGGCAGCCCCTGGAGTGGTTATTGAAGGGCCGTCTTCCGAAGGACCTTGCTACCAGTTGGAGGACAATAGTTGGTTTGTTAGGGATCCATCAAGACATTGCTTGTCATCAAATTCTTGTAATGAGCTGACGTCCAGTGATTGGGGAAGATATGGAACACCATTGTTTTCATGGAATGGCCAAGTTGTTGGCAGAAGACAGCTTAAAGCTCACCCCAGAACAAACTACAGAGGTCACGGAGATGAATATGATGCATTTTTCAATATATTTGAAGGGGGATCCCTTTTATATTGCAACATGTCTTTTGATGCGCTTCTAAATGTCAGAAAGCAACTTGAAGAATTAGGTTTCCCTTGCAAAGCTGTAAACGATGGTCTTTGGCTTCAGATGCTTCTTAGTCAGAGAGTACAGGAAATTGCCGCTGATACATGCAAAGTTTGCTCCCTCACGAATTGCACTTGTCAGAAGCAATTTGCATTTTCACATGGAGCTTCTACATCTGGATCTTACATGCAAGAACATAATCAGAACATTATGCCTGCCAGTGTGGGAAGTATATATGTTGCTGAATCTTCTGCAGGTGAAAGAAATGGTCTTTTTAGACCTGTACGAGTGCATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCCGTGGAACTACTTTTGTTCCGGCATCTTGTTCGCATCCTACACGTTTCGTCTTTTCTCGTGTACCATTTGGTGTTGGCAACAGAAACTATCCTCAGTCTGCAGCCAATGATGATTCAGAGACACGTGCTGACCCAAATGGTGACCTGTCTGGAGATGGATTGACAGCTGTAGTTGGGTTAAGCCAGGGAGGGAGTAATGGAACAAATGTACATACGGAGCTAACACAAAGGGGGTATGAAATGGGCATGCAAAGCAGCATGTCTGGAAGTAATGCTGGAGATGCAAGTACTGGTGGTATCCCCATGCAGATGTTAGAGACACCAGAACATACCATTGGTATAGAATGGGACAATGTCAACAGTGCTTCCATATCACTGGATATGAAAACACCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTACGTTTTGAGGATGTGCATAGGCTTGGTGATGGCCAGGTCAAGCATTCTACAGAAGTTTTCTACGCTGGTTCTTTGTGGAAGATCAGTGTACAAGCTTTTAATGATGAAGACCCTCAGAGACGGAGAACCCTTGGGCTGTTTCTTCATCGTCGGAAAGCAGAGATAACTGATATACATAGAAAGGTGCACATGTATGTTGATTCACGTGAAAAGGTGACTGCACGCTACCAGTTAACTGTCCCATCCAAGAGGGAAATGATGGTGTTTGGAAGCTTTAAACAAACAGGCACACTTCTACCTAAATATCCGAAGGGATGGGGTTGGCGAACTGCTCTGTTATTTGACGAGGTTGCTGATCTTCTCCAAAACGGTGCCCTAAGGGTCATTGCTGTAGTGCAGCTTGTATGA 2601 0.4502 MEEPQYREHPKTKIAAIPPPQHSDGASAELRGVDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNDEAIAMALAYLYGHHPKLNDSNAFRVLAAASFLDLQDLCGICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWIPNEEKRFELALHTFLAKGAHCKVEHLSHGISGSESATGIHADSINSKGKSVIDSCTTKRLETDLGKMNLKSGLKDPSTSSVLVELADPVADFNDGVSVSNEQVQQASYVRTPNLNPRYSGDMEGPSLGNSLPDTDVMTTSCYVDMPLGAEATAMAAPGVVIEGPSSEGPCYQLEDNSWFVRDPSRHCLSSNSCNELTSSDWGRYGTPLFSWNGQVVGRRQLKAHPRTNYRGHGDEYDAFFNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLTNCTCQKQFAFSHGASTSGSYMQEHNQNIMPASVGSIYVAESSAGERNGLFRPVRVHVRGAIDGLAGIGRGTTFVPASCSHPTRFVFSRVPFGVGNRNYPQSAANDDSETRADPNGDLSGDGLTAVVGLSQGGSNGTNVHTELTQRGYEMGMQSSMSGSNAGDASTGGIPMQMLETPEHTIGIEWDNVNSASISLDMKTPLSHFPPFRFGVRFEDVHRLGDGQVKHSTEVFYAGSLWKISVQAFNDEDPQRRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLTVPSKREMMVFGSFKQTGTLLPKYPKGWGWRTALLFDEVADLLQNGALRVIAVVQLV 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05732 866 SUPERFAMILY POZ domain 49 153 IPR011333 -
Viun3g05732 866 SMART BTB_4 55 155 IPR000210 GO:0005515
Viun3g05732 866 Pfam BTB/POZ domain 49 153 IPR000210 GO:0005515
Viun3g05732 866 ProSiteProfiles BTB domain profile. 55 125 IPR000210 GO:0005515
Viun3g05732 866 MobiDBLite consensus disorder prediction 618 641 - -
Viun3g05732 866 MobiDBLite consensus disorder prediction 1 25 - -
Viun3g05732 866 Gene3D Potassium Channel Kv1.1; Chain A 29 188 IPR011333 -
Viun3g05732 866 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 16 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05732 Viun-Chr3 62762503 62768621 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun3g05732 BTB 8.7e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05732 - - gmx:100806711 1613.97