Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05711 ATGGAAAACGACGACGGCAAGGAAATCGAAGCGAAGGATTACGCGCTTAGCGGCAAGATAATGCTAATCGCCATCGTCGTTCTCTTCGTCATCATCATCATAATGCTTTGCCTCCACGTCTACGTCCGCTGCACCCTCCTTCGAGCTCGCCGCCGGCAACAACTTCGCCGAAGAATCAACCGCCCGCGGTTCGTGTTCTACATCGACCCCGCCGCCCGCATTGCCCTCACCTCGCGCGGCCTCCACCCCTCCGTCATCTCCACGCTCCCGGTCTTCACCTTCTCCGATTCCACCCAAAAATCGGAATGCGCGGTGTGCTTGTCTGAGTTTGAGAACGGGGAAACGGGTCGGGTCTTACCCAAATGCAACCATAGTTTCCATACTGAGTGCATCGACATCTGGTTCCAGTCCCACACCACGTGTCCGCTTTGCAGGGCGCCTGTGGAGGCCATTTCCGACCAAGAAACTCGATCTGAGGAGGCTGTCGTTGTGTGTGAACCTGAAACGGTTGGGGAAGAGGTGGGCCGGTCAATACCGGTTGGTTCTTCTTCTTCGCCGGTGAGTCGGATAGTGTCGTTGAAGAGGATTCTGAGTAGAGAGAAAAAGGGAAGCTCCACAACCACCGAGTTAGATGCAGAACTGGAAGTGTGTGACTCGGTGAGTTGTTGA 669 0.5531 MENDDGKEIEAKDYALSGKIMLIAIVVLFVIIIIMLCLHVYVRCTLLRARRRQQLRRRINRPRFVFYIDPAARIALTSRGLHPSVISTLPVFTFSDSTQKSECAVCLSEFENGETGRVLPKCNHSFHTECIDIWFQSHTTCPLCRAPVEAISDQETRSEEAVVVCEPETVGEEVGRSIPVGSSSSPVSRIVSLKRILSREKKGSSTTTELDAELEVCDSVSC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05711 222 Pfam Ring finger domain 102 145 IPR001841 -
Viun3g05711 222 CDD RING-H2_EL5-like 102 145 - -
Viun3g05711 222 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 153 IPR044675 -
Viun3g05711 222 SMART ring_2 103 144 IPR001841 -
Viun3g05711 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 151 IPR013083 -
Viun3g05711 222 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Viun3g05711 222 FunFam E3 ubiquitin-protein ligase ATL6 70 151 - -
Viun3g05711 222 SUPERFAMILY RING/U-box 91 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05711 Viun-Chr3 62609110 62610307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05711 4 206 Rapid Response to Elicitors AT3G16720 40.769 7.60e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05711 - - gmx:100800859 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05711 3 62609110 62610307 Viun3g05711 3 62609110 62610307 ECH
Viun3g05711 3 62609110 62610307 Viun9g00144 9 898585 899894 PCT