Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05710 ATGGCGCCTGGATTCGACAGCGCTCATGAGAGGAAGAAGAAGCTCGCAGTTTTGAGCGTGTCTTCCGTCCTCCTGGTGGCGATGGTTGCCGCGGTGGCCGTCGGCATAAATGACGACGTCCATGGGCAACACGGGGAAGGAGGCGACGCCGGCATCGCGAAATCTCAGAGGAGCGTCCACATGTTATGTCAATCGGCCGAATACAAAGAAACCTGCCAGAAGAGTCTAGCCAATGCCTCCCACGATAACACTGACCTGAAGCAACTTATCATCGCCGCCTTCAACGCCACCTCCCAGGAGATTCACGAGAAAATCCAAAACTCAACGCTGTACCACGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGACATTTGCAAGGAAGTACTAGGTTACGCTGTGGATGATATAAACGAATCCGCTGCGACGTTGGAGAAGTTTGAGCTCAGCAAGATGAACGATTACGCCTATGACCTCAAGGTTTGGATCGCGGGTACCCTTGCCCACCAGCAGACATGCTTGGACGGGTTCGAGAACACGACCACCGAGGCTGGGAAGACAATGGCTAAGGTTCTGAACACGTCGTTGGAGATGAGCAGAAACGCGTTGGACATAGTGAACGGTGTGTCGTCTCTCTTCAAGGGTCTCAACTTCACCGCCTTCAGCTCCAGCACCACCAGCCCCAGCCACAACCCCAACCCCAACCCCAACCCCAACCCCAGCCCCAGCCACAGGAAGATTCTCTCGGAAGAAGAGACTTTGGTTGATGGGTTCCCTTCGTGGGTGAGTGAAGGGCAGAGGAAGATTCTGGAATCTGCTGAGCTCAAACCGAACGTGGTGGTGGCTCAGGATGGGAGTGGACAGGTCACAACAATCCACGAGGCTCTCAAACTGGTGCCTAAGAAGAACAAGGTGCCTTTTGTCATTCACATCAAGGCCGGTGTATACAGGGAGCATGTCAACCTGAACAAGCACATGGGCTTTGTCATCATGATCGGCGATGGCCCCACCCTCACCAGAATCACCGGCAGCAAAAACTACGTCGATGGCATCCAAACCTACAACACCGCAACCGTCGGTGTCAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACACCGCAGGAGCGGAGAAGCACCAAGCTGTGGCACTGAGGGTAACAGCCGACAAGGCAGTGTTCTACAACTGTCACATGGACGGGTACCAAGACACCCTGTACACCCAGTCTCAGCGGCAGTTCTACCGCGACTGCACCGTGACCGGCACAATCGACTTTGTCTTCGGCGACGCCATCGCCGTGTTCCAGAACTGCAAGTTCATCGTGAGGAAGCCCTTGGAGGACCAGCAGTGCATGGTGACCGCCGGCGGAAGGACGAAGGTGGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATCTTCACCGGCGAGGCTGAGCTGAAGGGCTTGACCCCCAAGATCGCGTACCTCGGGAGGCCCTGGAGGGTATTCTCGAAGGTGGTGATAATGGACTCAGAAATCGATGACATCTTCTCCCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAGAGATACCTGCACCTACTACGAATACAACAACAGGGGTCCTGGTGCAGACACCACCGGAAGAATCACGTGGCCAGGGTTTAAGGTGATTACCCCTGTTGAGGCTGATGATTACTACCCTGGGAAGTTCTTTGAGCTGGCTAACGTCACTGAACGTGACGGTTGGATCCTTGACTCTGGGGTACCCTATTCCCTTGGTCCTCTTCCACCACCCACCAACCAGCCCGCAGTTTAA 1815 0.5526 MAPGFDSAHERKKKLAVLSVSSVLLVAMVAAVAVGINDDVHGQHGEGGDAGIAKSQRSVHMLCQSAEYKETCQKSLANASHDNTDLKQLIIAAFNATSQEIHEKIQNSTLYHELATDNMTKQAMDICKEVLGYAVDDINESAATLEKFELSKMNDYAYDLKVWIAGTLAHQQTCLDGFENTTTEAGKTMAKVLNTSLEMSRNALDIVNGVSSLFKGLNFTAFSSSTTSPSHNPNPNPNPNPSPSHRKILSEEETLVDGFPSWVSEGQRKILESAELKPNVVVAQDGSGQVTTIHEALKLVPKKNKVPFVIHIKAGVYREHVNLNKHMGFVIMIGDGPTLTRITGSKNYVDGIQTYNTATVGVNAANFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCTVTGTIDFVFGDAIAVFQNCKFIVRKPLEDQQCMVTAGGRTKVDSPSALVFQSCIFTGEAELKGLTPKIAYLGRPWRVFSKVVIMDSEIDDIFSPEGYMPWMGSAFRDTCTYYEYNNRGPGADTTGRITWPGFKVITPVEADDYYPGKFFELANVTERDGWILDSGVPYSLGPLPPPTNQPAV 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05710 604 SUPERFAMILY Pectin lyase-like 277 571 IPR011050 -
Viun3g05710 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 210 IPR035513 -
Viun3g05710 604 NCBIfam pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Viun3g05710 604 SMART PMEI_2 54 206 IPR006501 GO:0004857
Viun3g05710 604 PANTHER PECTINESTERASE 22 583 - -
Viun3g05710 604 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Viun3g05710 604 CDD PMEI-like_3 62 212 - -
Viun3g05710 604 Gene3D - 273 593 IPR012334 -
Viun3g05710 604 FunFam Pectinesterase 55 211 - -
Viun3g05710 604 Pfam Pectinesterase 279 571 IPR000070 GO:0030599|GO:0042545
Viun3g05710 604 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Viun3g05710 604 FunFam Pectinesterase 4 276 594 - -
Viun3g05710 604 ProSitePatterns Pectinesterase signature 1. 304 323 IPR018040 -
Viun3g05710 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 209 IPR035513 -
Viun3g05710 604 MobiDBLite consensus disorder prediction 224 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05710 Viun-Chr3 62602240 62604300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05710 1 595 Carbohydrate Esterase AT3G05610 42.596 4.78e-180 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05710 K01051 - gmx:100820068 895.96