Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05705 ATGTGTGGTGGTTCTATCATTTCTGATTTCATAGACGTGGATATCAAGAATGCTCCACAATCCACCACCCAACACCTCTTCTCTCACCTCCACACTTTCCACGCCACCTCTTCTTCCACACTCCAACCATCTCACCACACACACAACAAAGTGGAGGACCCATGTGAGAAGGTGAAGAACAAAAGAGCCGTTGCAGAGAAGGGTGAGGCGCGAGTACGGAAGACCGCCTACAGAGGAATCAGGCGAAGGCCGTGGGGCAAGTGGGCTGCGGAAATAAGGGACCCACGCAAGGGTGTGCGCGTGTGGCTCGGTACCTTCGCCACTGCCGAAGAAGCCGCACGCGCCTACGACGACGCCGCCATGCGCATCCGCGGAGACAAGGCCAAGCTCAATTTCCCCCGCCACCACCATCACCAGCACCACTCATCCAACAACAACAACCCATGCCTCAGCCCCGAGTTGACTCAGCCCTGTTATCAACCCACTTTTAATAACCTCGACCAGGACCCTGAACTCGCGCACCATATTTCCAACCTGGAATCGTTTCTCGGTTTGGAGCACGAACAGGTTCCGATGCAGGCGCTACCACTTCCTGAGTGGGACCCGCTCCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGA 645 0.5581 MCGGSIISDFIDVDIKNAPQSTTQHLFSHLHTFHATSSSTLQPSHHTHNKVEDPCEKVKNKRAVAEKGEARVRKTAYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFATAEEAARAYDDAAMRIRGDKAKLNFPRHHHHQHHSSNNNNPCLSPELTQPCYQPTFNNLDQDPELAHHISNLESFLGLEHEQVPMQALPLPEWDPLHDVVLSNHHLF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05705 214 CDD AP2 77 133 IPR001471 GO:0003700|GO:0006355
Viun3g05705 214 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Viun3g05705 214 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Viun3g05705 214 PANTHER DNA-BINDING DOMAIN 48 156 IPR044808 GO:0003700|GO:0009873
Viun3g05705 214 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Viun3g05705 214 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Viun3g05705 214 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Viun3g05705 214 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Viun3g05705 214 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Viun3g05705 214 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Viun3g05705 214 MobiDBLite consensus disorder prediction 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05705 Viun-Chr3 62580111 62581091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05705 1 186 AP2-EREBP Transcription Factor Family AT3G16770 44.643 9.80e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun3g05705 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05705 K09286 - gmx:100527415 165.622