Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05683 ATGTTGTTGCTGTTGCTGTTATTACTATTGTTGTGGTGGTTCTACTGTTCTGTTAGGTTCGGTTTGGATCTCCGAAGCATGAATCTGGGCAACGGAAAGGGATCCATGTCAACGGTTACTACAACAGCGGTTATGAAATCCGGAGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTCGACGATGATCCCACGTGCCTCATGATTCTCGAGAAGATGCTTCGCACGTGCCTCTACGAAGTTACCAAATGCAACCGAGCAGAGACTGCGCTTTCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGGATGGATTTAAACTTCTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTGACTCACGGTGCTTGTGATTATCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAATGAGTGGAAAGATGCAGAGCAATCCGGCAGTGCCGAAGAAGGAGATCGCCAACCTAAGGCATCTGATGAAGCAGATTACTCTTCCTCAGCTAACGAAGGCAGTTGGAGAAACTCAAAGAAGAGAAGGGACGAGGAGGAGGAGGCAGAGGATAGAGATGACACATCCACGTTAAAGAAACCGCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAGCTCGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGGTTGTATCTTCGAAGATTGAGTGGAGTTTCTCAACACCAGAATAATATGAGCAACTCCTTTCTCGGCTCTCAAGAGGCAACGTTTGGGACAATTTCTTCGATTAATGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTTCCTGCTCAAAGTCTGGCTACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCAAAAGCTGGTGTACCAATGCCTCTCATGGATCAAAGGAACCTTTTTAGTTTTGAAAACCCAAGGGTACGATTTGGAGAAGGCCAACAGCAACATTTAAGCAGTAGTAAACCAATGAACTTATTGCTTGGAATCCCCACCAACATGGAGCCTAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCGGTTTGAATATGCGAGTCAATGCATCTGCCCCACAAGGCAACCCCTTATTGATGCAGATGCCACAATCTCAACCTAGAGGTCAGATGCTAAGTGAAAATACTGGTCCTCGTGTTCCCAGGCTTCCATCATCGTTGGGGCACCCTAATGTATCAAATGGAATTTCTAATGGCTTTCTGGGCAGAAATGGAATTGCTGGTAATAACAGAGGACCTGCGTATAATCCTGTTCCACCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAAGTTCTGAAGTCTCCGTCAACAATAGTTTACCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCATTTCAGGAGGAAGTTACATCTGGAATTAAAGCATCTGGTGGATTCCCAAGTTATGATATTTTTAATGAACTGCACCATCACAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACAGTGCCCCCCATCATGCAAATCATTTACAAGGTAACATTGATGTCTCGCCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACCCAGCAGACCGGCCAAAGCAGAGATGCTACTTTAATTGGAAAAGCTATGTTCTCCGTGGGAGAAGGGTCGGAGCAAGATAACCTCCAAAATGCTGTTCAACACCTCCATCCGCTTCTTGTTGACAATTCAGTAAGGGTTAAGTCTGAAAGAATTCCCGATGCAAGCTCCCAGACTAACCTCTTCCCTGACCATTATGGGCAGGAGGATCTGATGAGTGCGCTTCTAAAGCAGCAAGAAGGCATGGGACCATCTGAGAGTGAGTTTGAATTTGATGCTTATTCTCTGGACAACATCCCTGTCTAG 2118 0.457 MLLLLLLLLLLWWFYCSVRFGLDLRSMNLGNGKGSMSTVTTTAVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMSNSFLGSQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPLMDQRNLFSFENPRVRFGEGQQQHLSSSKPMNLLLGIPTNMEPKQLANLHQSTQSIAGLNMRVNASAPQGNPLLMQMPQSQPRGQMLSENTGPRVPRLPSSLGHPNVSNGISNGFLGRNGIAGNNRGPAYNPVPPNSSLLSFPMNQSSEVSVNNSLPLGSTPGISSITTKGSFQEEVTSGIKASGGFPSYDIFNELHHHKSHDWEITNPGLTYSAPHHANHLQGNIDVSPSVLVHQGFSSTQQTGQSRDATLIGKAMFSVGEGSEQDNLQNAVQHLHPLLVDNSVRVKSERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPSESEFEFDAYSLDNIPV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05683 705 Gene3D - 236 298 - -
Viun3g05683 705 MobiDBLite consensus disorder prediction 181 236 - -
Viun3g05683 705 ProSiteProfiles Response regulatory domain profile. 60 175 IPR001789 GO:0000160
Viun3g05683 705 NCBIfam myb-like DNA-binding domain, SHAQKYF class 239 292 IPR006447 GO:0003677
Viun3g05683 705 MobiDBLite consensus disorder prediction 181 202 - -
Viun3g05683 705 Gene3D - 59 194 - -
Viun3g05683 705 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 326 IPR045279 GO:0009736
Viun3g05683 705 Pfam Response regulator receiver domain 61 169 IPR001789 GO:0000160
Viun3g05683 705 PIRSF RR_ARR_type-B 37 697 IPR017053 GO:0003677|GO:0003700|GO:0009736
Viun3g05683 705 FunFam Two-component response regulator 59 196 - -
Viun3g05683 705 SUPERFAMILY CheY-like 58 181 IPR011006 -
Viun3g05683 705 FunFam Two-component response regulator 235 298 - -
Viun3g05683 705 SUPERFAMILY Homeodomain-like 236 296 IPR009057 -
Viun3g05683 705 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 295 IPR017930 -
Viun3g05683 705 MobiDBLite consensus disorder prediction 215 236 - -
Viun3g05683 705 SMART REC_2 59 171 IPR001789 GO:0000160
Viun3g05683 705 CDD REC_typeB_ARR-like 61 175 - -
Viun3g05683 705 Pfam Myb-like DNA-binding domain 241 291 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05683 Viun-Chr3 62433520 62437583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05683 94 705 Response Regulator Gene Family AT3G16857 51.459 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun3g05683 Response_reg 6.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05683 - K14491 gmx:100814930 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05683 3 62433520 62437583 Viun3g05683 3 62433520 62437583 ECH
Viun3g05683 3 62433520 62437583 Viun9g00113 9 703839 707570 PCT