Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05669 ATGGCGAATAACATGGCGGCGCAACTTGCTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCGAGAACCAGATGGCTTCGTCCCAATGAAATTCATGCCATGCTGTGTAATTACAAGTATTTTCCCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGCGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGACGGGAAAACTGTTAAAGAAGCTCATGAGCACTTGAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGTCAGGATAACTCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGATGCAAGGTTCTCCCGTCACTCCTATAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGGTTGTATTAGATGAAATAGATTCAGGGACCACAACCACATATGCCGGTGACATGAGTGGCAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAGTGGGATGACCTAGTGGATGCAAATGATCATAATGCCTCTACCATGCCTAATGGAGGCAGTGTTGCATATTTTAATCAACAAGATCAAACTTTACTGAATGGAAGTTTCGGCAATGTAGTCAACAATCTATCTGCAGAAATTTCTTCTTTTAATTGTCTTCCTCAACCAATTGCTGGGAGCAACAGTGTTACTTACAATTTTTCAGAAATTGCTACATTTCAGATGATGGGCAATCAAGCAAATCCAAATGAGCAGAGGAGTAATACTGTTTCTTTAAGTGCCGGATCCTTTGACCCTTTGGTCAGTGATAGATTGCAAAGTCAGGACAGTTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTCGAGTCACCAGTTTCATCTGTTCATGAACCATATTTGTCCCCGGTAGTGGATGGTCAGCAAATTTCTCAGCCAGAACAAGTATTTACTATCACGGATGTATCCCCTACTTGGGTGTCTTCCTCTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTATCGGTGCTGGGTACCACCACATTCTCCAGGAATCGTGAATCTCTACTTGAGTTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCTTGTCTTGCATGATCCTACATCTGCAATGGAAGAGAATAGCAATTGGGATGAGTTTCGACTACAAATGAGGCTTGCGTATTTGCTCTTTGCTAAACAACTGAGCCTAGATGTCATCTCCTGTAAAGTACCACCTAATAGACTTAAGGAAGCTAGGCAATTTGCCCTCAGAACAGCATTTATTTCCAATAGTTGGCAGTATTTAATCAAGTCAACTGAAGACAACCAGATTCCATTTTCACAAGCAAAAGATGCCCTCTTTGGAATTGCGTTGAAAAACAGGCTAAGGGAATGGCTTTTGGAAAGAATTGTTCTAGGCTATAAGACGACTGAGTATGATTCACATGGCCAGAGCGTAATCCATTTGTGTGCTATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAAAAAATGGTTGCTACTCTGCTGTCTGCTGGGGCAAAGTCAAATTTGGTTACTGATCCTACGCCAAAAAATCCTGGTGGTTGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCTGAAAAATCTCTGGTTCAGCACTTTAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCGTTGGAAACTAGCACAACTGATACAGTAAATTCTGCATGCCTTACTGATGACCAGCAGAACATGAAGGATACATTGGCAGCTTACCGAACTGCTGCTGATGCAGCTGCCCGCATACAGGCTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAGCATGCGTTCAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGCACATGGAAGATTCGTAAAGAATTTCTCCTCATGCGTCGCCATGCTGTTAAAATTCAAGCTGCTTTTCGTTGCTTTCAGCTGCGGAAGCATTATCGCAAAATTCTCTGGTCTGTAGGTGTGGTTGAGAAAGCGGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTGCAGGTCAGAACTGCTGAAGTGGGAACTGGAGATCAGGATAAGGAAAGTGTTGTAGAGGAGGAATTCTTTCGAACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCAGTGGTGAGGGTTCAGGCTATGTTCCGGTCGAAGAAAGCACAAGAAGAGTATAGGAGGATGAAAGTGGCCCTAGATCAAGCAAAGCTGGAACGGGAATACGAGCAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAG 2769 0.4269 MANNMAAQLAGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPINSHSSSVSDPPAPWVVLDEIDSGTTTTYAGDMSGNVKDKSHELRLHEINTLEWDDLVDANDHNASTMPNGGSVAYFNQQDQTLLNGSFGNVVNNLSAEISSFNCLPQPIAGSNSVTYNFSEIATFQMMGNQANPNEQRSNTVSLSAGSFDPLVSDRLQSQDSFGMWVNHIMSDSPCSVDDPALESPVSSVHEPYLSPVVDGQQISQPEQVFTITDVSPTWVSSSEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLYLSFDGHKPISQVVNFEYRTLVLHDPTSAMEENSNWDEFRLQMRLAYLLFAKQLSLDVISCKVPPNRLKEARQFALRTAFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLREWLLERIVLGYKTTEYDSHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYYGREKMVATLLSAGAKSNLVTDPTPKNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDTVNSACLTDDQQNMKDTLAAYRTAADAAARIQAAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRHAVKIQAAFRCFQLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVRTAEVGTGDQDKESVVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKVALDQAKLEREYEQLLSTEVDMELKA 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05669 922 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Viun3g05669 922 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Viun3g05669 922 SMART iq_5 790 812 IPR000048 GO:0005515
Viun3g05669 922 SMART iq_5 871 893 IPR000048 GO:0005515
Viun3g05669 922 SMART iq_5 767 789 IPR000048 GO:0005515
Viun3g05669 922 Coils Coil 885 905 - -
Viun3g05669 922 Gene3D - 535 674 IPR036770 -
Viun3g05669 922 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Viun3g05669 922 Gene3D - 765 815 - -
Viun3g05669 922 Gene3D Immunoglobulins 362 457 IPR013783 -
Viun3g05669 922 Pfam Ankyrin repeats (3 copies) 552 632 IPR002110 GO:0005515
Viun3g05669 922 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Viun3g05669 922 FunFam calmodulin-binding transcription activator 5 534 674 - -
Viun3g05669 922 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Viun3g05669 922 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Viun3g05669 922 SMART ANK_2a 604 633 IPR002110 GO:0005515
Viun3g05669 922 SMART ANK_2a 643 672 IPR002110 GO:0005515
Viun3g05669 922 Pfam IQ calmodulin-binding motif 771 788 IPR000048 GO:0005515
Viun3g05669 922 Pfam IQ calmodulin-binding motif 792 812 IPR000048 GO:0005515
Viun3g05669 922 FunFam Calmodulin-binding transcription activator 5 363 459 - -
Viun3g05669 922 SUPERFAMILY Ankyrin repeat 552 668 IPR036770 -
Viun3g05669 922 SMART CG_1_2 28 146 IPR005559 GO:0003677
Viun3g05669 922 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Viun3g05669 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 818 IPR027417 -
Viun3g05669 922 SUPERFAMILY E set domains 368 455 IPR014756 -
Viun3g05669 922 ProSiteProfiles IQ motif profile. 768 797 IPR000048 GO:0005515
Viun3g05669 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05669 Viun-Chr3 62296665 62305247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05669 28 905 CAMTA Transcription Factor Family AT3G16940 54.597 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g05669 Ank_2 3.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05669 K21596 - gmx:100793970 1622.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05669 3 62296665 62305247 Viun3g05669 3 62296665 62305247 ECH
Viun3g05669 3 62296665 62305247 Viun9g00099 9 581320 591885 PCT