Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05668 ATGGCGAATAACATGGCGGCGCAACTTGCTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCGAGAACCAGATGGCTTCGTCCCAATGAAATTCATGCCATGCTGTGTAATTACAAGTATTTTCCCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGCGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGACGGGAAAACTGTTAAAGAAGCTCATGAGCACTTGAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGTCAGGATAACTCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGATGCAAGGTTCTCCCGTCACTCCTATAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGGTTGTATTAGATGAAATAGATTCAGGGACCACAACCACATATGCCGGTGACATGAGTGGCAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAGTGGGATGACCTAGTGGATGCAAATGATCATAATGCCTCTACCATGCCTAATGGAGGCAGTGTTGCATATTTTAATCAACAAGATCAAACTTTACTGAATGGAAGTTTCGGCAATATGATGGGCAATCAAGCAAATCCAAATGAGCAGAGGAGTAATACTGTTTCTTTAAGTGCCGGATCCTTTGACCCTTTGGTCAGTGATAGATTGCAAAGTCAGGACAGTTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTCGAGTCACCAGTTTCATCTGTTCATGAACCATATTTGTCCCCGGTAGTGGATGGTCAGCAAATTTCTCAGCCAGAACAAGTATTTACTATCACGGATGTATCCCCTACTTGGGTGTCTTCCTCTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTATCGGTGCTGGGTACCACCACATTCTCCAGGAATCGTGAATCTCTACTTGAGTTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCTTGTCTTGCATGATCCTACATCTGCAATGGAAGAGAATAGCAATTGGGATGAGTTTCGACTACAAATGAGGCTTGCGTATTTGCTCTTTGCTAAACAACTGAGCCTAGATGTCATCTCCTGTAAAGTACCACCTAATAGACTTAAGGAAGCTAGGCAATTTGCCCTCAGAACAGCATTTATTTCCAATAGTTGGCAGTATTTAATCAAGTCAACTGAAGACAACCAGATTCCATTTTCACAAGCAAAAGATGCCCTCTTTGGAATTGCGTTGAAAAACAGGCTAAGGGAATGGCTTTTGGAAAGAATTGTTCTAGGCTATAAGACGACTGAGTATGATTCACATGGCCAGAGCGTAATCCATTTGTGTGCTATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAAAAAATGGTTGCTACTCTGCTGTCTGCTGGGGCAAAGTCAAATTTGGTTACTGATCCTACGCCAAAAAATCCTGGTGGTTGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCTGAAAAATCTCTGGTTCAGCACTTTAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCGTTGGAAACTAGCACAACTGATACAGTAAATTCTGCATGCCTTACTGATGACCAGCAGAACATGAAGGATACATTGGCAGCTTACCGAACTGCTGCTGATGCAGCTGCCCGCATACAGGCTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAGCATGCGTTCAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGCACATGGAAGATTCGTAAAGAATTTCTCCTCATGCGTCGCCATGCTGTTAAAATTCAAGCTGCTTTTCGTTGCTTTCAGCTGCGGAAGCATTATCGCAAAATTCTCTGGTCTGTAGGTGTGGTTGAGAAAGCGGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTGCAGGTCAGAACTGCTGAAGTGGGAACTGGAGATCAGGATAAGGAAAGTGTTGTAGAGGAGGAATTCTTTCGAACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCAGTGGTGAGGGTTCAGGCTATGTTCCGGTCGAAGAAAGCACAAGAAGAGTATAGGAGGATGAAAGTGGCCCTAGATCAAGCAAAGCTGGAACGGGAATACGAGCAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAG 2661 0.4303 MANNMAAQLAGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPINSHSSSVSDPPAPWVVLDEIDSGTTTTYAGDMSGNVKDKSHELRLHEINTLEWDDLVDANDHNASTMPNGGSVAYFNQQDQTLLNGSFGNMMGNQANPNEQRSNTVSLSAGSFDPLVSDRLQSQDSFGMWVNHIMSDSPCSVDDPALESPVSSVHEPYLSPVVDGQQISQPEQVFTITDVSPTWVSSSEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLYLSFDGHKPISQVVNFEYRTLVLHDPTSAMEENSNWDEFRLQMRLAYLLFAKQLSLDVISCKVPPNRLKEARQFALRTAFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLREWLLERIVLGYKTTEYDSHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYYGREKMVATLLSAGAKSNLVTDPTPKNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDTVNSACLTDDQQNMKDTLAAYRTAADAAARIQAAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRHAVKIQAAFRCFQLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVRTAEVGTGDQDKESVVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKVALDQAKLEREYEQLLSTEVDMELKA 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05668 886 Coils Coil 849 869 - -
Viun3g05668 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 782 IPR027417 -
Viun3g05668 886 Gene3D - 499 638 IPR036770 -
Viun3g05668 886 FunFam calmodulin-binding transcription activator 5 498 638 - -
Viun3g05668 886 SMART iq_5 754 776 IPR000048 GO:0005515
Viun3g05668 886 SMART iq_5 731 753 IPR000048 GO:0005515
Viun3g05668 886 SMART iq_5 835 857 IPR000048 GO:0005515
Viun3g05668 886 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 863 - -
Viun3g05668 886 SUPERFAMILY Ankyrin repeat 516 632 IPR036770 -
Viun3g05668 886 Pfam IQ calmodulin-binding motif 735 752 IPR000048 GO:0005515
Viun3g05668 886 Pfam IQ calmodulin-binding motif 756 776 IPR000048 GO:0005515
Viun3g05668 886 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Viun3g05668 886 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Viun3g05668 886 ProSiteProfiles IQ motif profile. 837 865 IPR000048 GO:0005515
Viun3g05668 886 ProSiteProfiles IQ motif profile. 679 708 IPR000048 GO:0005515
Viun3g05668 886 SMART ANK_2a 568 597 IPR002110 GO:0005515
Viun3g05668 886 SMART ANK_2a 607 636 IPR002110 GO:0005515
Viun3g05668 886 ProSiteProfiles IQ motif profile. 732 761 IPR000048 GO:0005515
Viun3g05668 886 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Viun3g05668 886 ProSiteProfiles Ankyrin repeat region circular profile. 568 596 - -
Viun3g05668 886 Gene3D Immunoglobulins 326 421 IPR013783 -
Viun3g05668 886 SMART CG_1_2 28 146 IPR005559 GO:0003677
Viun3g05668 886 SUPERFAMILY E set domains 332 419 IPR014756 -
Viun3g05668 886 ProSiteProfiles IQ motif profile. 755 779 IPR000048 GO:0005515
Viun3g05668 886 Gene3D - 729 779 - -
Viun3g05668 886 Pfam Ankyrin repeats (3 copies) 517 596 IPR002110 GO:0005515
Viun3g05668 886 FunFam Calmodulin-binding transcription activator 5 327 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05668 Viun-Chr3 62296665 62305247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05668 28 869 CAMTA Transcription Factor Family AT3G16940 56.923 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g05668 Ank_2 3.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05668 K21596 - gmx:100793970 1558.89