Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05645 ATGGGAACTCCACCAACGGATGAACTCGTGAAGAAGATCCAACAGTTAGAAGAAGGACACGCGCACTTGAAGCAAGAAATGTCAAAGCTCAAACTCTCCGATGTGAGGCATGGACATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCCAGATTGGGCGCTCCGCCGAGGAGGCGGACTGATGCGCCGGCAGCTGCGTGGAAGAGAGGTTCGTGTTCCTTCAAACAATCCTCGCCGCTGCAGAGAGAGAGCCGCGGCGGCGGCGATCCTCAAATTCACGGCGGCGGAGGTGGAGGAGGAGAAGGAGAAGGTGCTACTCCGTGCCGTGGTCCTTCCGCGGTGAATTTCACGGAACGGCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAATTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACAGCAGAGGAAGCTTTAGGGCGGGATGGGATTGAGCTGCTTGTAGACCCTAGGGATTTGGGCTTGGCCAATGATACACTTAACCGTGTAATGATGGGAGAGAACTGGACAGGGCAATTTCCGGTCAAGAATAAGATGGGAGAGAAGTTCATAGCCGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATAATTTGTGTCTCTTGTGATTCACGGCCTTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACTGAGTTAGAATTGGACTCGGGCGGAACTCGATCTAGAAGTAGCATTACGAATAAACTTGGCATTGACACTCAGCAGCCACTTCAAGTTGCTCTTGCGTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAAGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGGTGGAAGCGGTGACAGTCATCATTCTGAGCATAGTTTGTCGGAATCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCGTCCCATTTTGGTGTGCTTTCTCACGGCGAAGAAAAATCTCAGGGAAAATCTTCGAGAGGGTCTGGTGACGAGAGTGAAGGAAAATCTATTCACAAAATCTTACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGACCGAGAAGGTTCAGATGGATCAGAGGGAACCAATGTTCGTGTTACTGGACCCTGGAGACAGAATGATCGAGAAAATGAATCAGTTAATCAGAAGATTCTGTCTTCTGGCTTGAAGCAAGAAAGCCAGGGAGGTGAAAGTAATCGCCCTAATAACAATGAAGTTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGATCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTTAAAGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATATTGTCCTTCAGACAAGAGGTGTCTGTAATGAAAAGACTTCGTCACCCAAATATTCTTCTCTTTATGGGGGCCGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACTTCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGGGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAGTTAAGCATGAAACATATCTCACAACTAAGACTGGAAGGGGCACGCCCCAATGGATGGCACCCGAAGTCCTTCGTAATGAACCCTCCGATGAGAAACTTTGA 2043 0.4665 MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPRRRTDAPAAAWKRGSCSFKQSSPLQRESRGGGDPQIHGGGGGGGEGEGATPCRGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGRDGIELLVDPRDLGLANDTLNRVMMGENWTGQFPVKNKMGEKFIAVATNTPFYDDDGSLVGIICVSCDSRPFLEMKVPMSGVRNTELELDSGGTRSRSSITNKLGIDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREGGSGDSHHSEHSLSESVLSDQREDANSSGASTPRGDVPPSHFGVLSHGEEKSQGKSSRGSGDESEGKSIHKILPAKAEAWIQRKTLSWPWRTKDREGSDGSEGTNVRVTGPWRQNDRENESVNQKILSSGLKQESQGGESNRPNNNEVSGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRVKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05645 680 Gene3D Phosphorylase Kinase; domain 1 494 578 - -
Viun3g05645 680 Pfam PAS fold 121 227 IPR013767 GO:0006355
Viun3g05645 680 MobiDBLite consensus disorder prediction 307 325 - -
Viun3g05645 680 MobiDBLite consensus disorder prediction 398 460 - -
Viun3g05645 680 MobiDBLite consensus disorder prediction 31 112 - -
Viun3g05645 680 CDD STKc_MAP3K-like 507 679 - -
Viun3g05645 680 ProSiteProfiles Protein kinase domain profile. 501 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05645 680 SMART pas_2 120 187 IPR000014 -
Viun3g05645 680 ProSiteProfiles PAS repeat profile. 118 189 IPR000014 -
Viun3g05645 680 SUPERFAMILY PYP-like sensor domain (PAS domain) 124 227 IPR035965 -
Viun3g05645 680 CDD PAS 129 230 IPR000014 -
Viun3g05645 680 MobiDBLite consensus disorder prediction 409 460 - -
Viun3g05645 680 SUPERFAMILY Protein kinase-like (PK-like) 492 677 IPR011009 -
Viun3g05645 680 MobiDBLite consensus disorder prediction 358 379 - -
Viun3g05645 680 Gene3D Transferase(Phosphotransferase) domain 1 579 680 - -
Viun3g05645 680 FunFam PAS domain-containing protein tyrosine kinase 494 578 - -
Viun3g05645 680 Pfam Protein tyrosine and serine/threonine kinase 501 674 IPR001245 GO:0004672|GO:0006468
Viun3g05645 680 Coils Coil 6 33 - -
Viun3g05645 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Viun3g05645 680 MobiDBLite consensus disorder prediction 300 382 - -
Viun3g05645 680 Gene3D PAS domain 130 232 - -
Viun3g05645 680 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 189 675 - -
Viun3g05645 680 MobiDBLite consensus disorder prediction 326 341 - -
Viun3g05645 680 NCBIfam PAS domain S-box protein 119 227 IPR000014 -
Viun3g05645 680 SMART serkin_6 501 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05645 Viun-Chr3 62064659 62070567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05645 1 679 MAP Kinase Kinase Kinase AT3G06620 57.143 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun3g05645 PK_Tyr_Ser-Thr 5.1e-45 CL0016