Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05634 ATGCTCCTGGCATTGATGAATCTGTTCTCGCTGTGTTGGAAGCCGTTCGGGCGCGATGCTGATCGATACGATTCCATCGGAGTTATCGGGAGCAACTTCGCCGGGAGAGAAGGCAGAGAAGGCTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCTCCGGCGATTTCTCCATGGCCGTAGTTCAGGCCAACCAGGTTCTCGAAGACCAAAGCCAGATCGAGTCCGGTCCTCTCGGCACATTCGTCGGCATATACGACGGTCACGGAGGACCCGACGCCTCCAGATATGTCTGCGATCACTTGTTTCGCCATTTTCAAGCATCATCGGCTGAGTCACGCGGGCTTGTGACAGCGCAAACAATTGAAAGAGCTTTTCGCCAGACGGAAGACGGATACACAGCCCTCGTGTCAAGTTCCTGGAATGCTCGACCTCAAATTGCGAGTGCTGGTACCTGTTGTCTAGTTGGAGTGATATTTCAACAGACACTCTTTGTGGCAAACGCTGGAGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCTACAGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTTAAAGAATCACACCCTCATGATCCTCAAATTGTGGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCAAGATCTATAGGTGACGTATATTTAAAACATCCACAATTTAACCGGGAACCACTTAATCCAAAATTCAGACTTCCTCAACCGATGCACATGCCTATCCTGAGTGCTAATCCCAGTATTCTTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACTTGAGTAATGAGAAAGCTGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCGAAGAGACTTATCAAGGCCGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGGTATTCGGATCTGCGTAAGATTGACAAGAAGGTTCGACGCCATTTCCATGATGATATATCTGTTATTGTTTTATTCTTAAACCACGACCTTATTTCCAGAGGCACAGTGCTAGACTCGGCACTTTCACTTCGAAGCGCTCTCGATCACTGA 1140 0.4763 MLLALMNLFSLCWKPFGRDADRYDSIGVIGSNFAGREGREGLLWFRDVGKYASGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQASSAESRGLVTAQTIERAFRQTEDGYTALVSSSWNARPQIASAGTCCLVGVIFQQTLFVANAGDSRVVLGKKVGNTGGMAAIQLSTEHNANLEAVRQELKESHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHPQFNREPLNPKFRLPQPMHMPILSANPSILSHPLQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDSALSLRSALDH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05634 379 SUPERFAMILY PP2C-like 65 357 IPR036457 -
Viun3g05634 379 Pfam Protein phosphatase 2C 79 326 IPR001932 -
Viun3g05634 379 FunFam Probable protein phosphatase 2C 42 46 364 - -
Viun3g05634 379 Gene3D - 47 364 IPR036457 -
Viun3g05634 379 ProSiteProfiles PPM-type phosphatase domain profile. 55 356 IPR001932 -
Viun3g05634 379 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Viun3g05634 379 CDD PP2Cc 56 356 IPR001932 -
Viun3g05634 379 PANTHER PROTEIN PHOSPHATASE 53 354 IPR015655 GO:0004722|GO:0006470
Viun3g05634 379 SMART PP2C_4 42 354 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05634 Viun-Chr3 62003882 62007904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05634 1 376 PP2C-type Phosphatase Gene Family AT4G38520 57.403 5.97e-156 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05634 K01102 - gmx:100790813 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05634 3 62003882 62007904 Viun3g05634 3 62003882 62007904 ECH
Viun3g05634 3 62003882 62007904 Viun6g01862 6 25666791 25674945 PCT