Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05630 ATGGAACCAGGAAGCCCTTCGTCGCCGGATCCCGAATCGCCATCCTCTCCTTCCGTTGGTTTCAACACCGACCAGATTCCTCACACCCATACCAGCCGTGCCTCCGAGGACGACGAGGCTTCCGTTGACCCCAACATCGTACCAGATGATCGTGAGGAACCACCCGAGGAAGAGGAAGATGGAGAGGATCTTTTCAACGACAATTTCATGGATGACTATCGGAGAATGGATGAGGCTGACCAGTTCGAAGATTTTGGGCTGGACGACAAATTTGAAGACGACAGAGACTTTGATCAAATTATGGAGGATCGAAGGGCTGCGGAGATGGAAATCGACGCACGTGAGGGTCGCACTACCAATCGCAACAAGCTTCCCCAGCTTCTCCACGACCAAGATACGGATGATGACAGTCACAGGCCTTCTAAAAGGGCTCGAGCTGATTTCAGAGCTTCTTTACCGAGTGATGATGATATGCAAAGTTCACCTGGAAGGTCACGAGGGCACTCAAGGGAGGACTTCCATACGACTGATCAAACCGAGGACGATCGAGATGATGATGACTTTGATGACGGGTATGAGATGTATCAAGTTCAAGGAACACTTAGGGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCTTACTAACATATGTTAATCCGAAAAATGAACACCGGGACAAGGAATACGTGTGGCTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATTGATTATAAACAATTTATCTATGTTCATCCCAACATCGCCATTTGGCTGGCTGATGCGCCTCAGTCTGTCTTAGAAGTAATGGAAGATGTTACCAAGAGCGTTGTCTTTGAGTTGCATCCAAATTACAGAAATATACACCAAAAGATTTACGTACGCATTACCAACTTGCCAGTTTACGATCAGATTCGAAATATAAGACAAATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACTAGGCGCTCCGGAGTTTTTCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAATGTGGGGCAATTTTGGGTCCCTTTTTCCAGAATTCCTATTCAGAGGTGAAAGTTGGGTCTTGTCCTGAGTGCCAATCAAAAGGACCATTCACTGTCAACATTGAACAGACAATTTATAGGAACTTTCAGAAGCTTACCCTCCAAGAAAGTCCAGGAATAGTTCCTGCAGGTCGTCTTCCAAGATACAAGGAAGTGATATTATTGAATGATCTTATTGACTGCGCTCGCCCTGGCGAAGAGATTGAGGTCACTGGTGTTTATACCAATAATTTTGACTTATCCCTAAACACAAAAAATGGGTTTCCAGTATTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTGTTTTCTGCTTACAAACTGACACAGGAAGACATGGCAGAGATTGAAAATTTGGCCAAAGACCCTCGAATCGGAGAAAGGATTATTAAGTCCATTGCTCCATCAATCTATGGTCACGATGACATAAAAACTGCAATCGCTTTAGCTATGTTTGGAGGCCAAGAAAAGAATGTTGAAGGAAAGCATCGGCTTCGAGGAGACATAAATGTTCTTCTTCTGGGTGATCCAGGAACAGCGAAGTCTCAGTTTCTCAAGTATGTTGAAAAAACTGGACAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCAGCCGTGGGTCTCACAGCTGCTGTTCACAAGGATCCAATCACACGGGAGTGGACTCTTGAGGGAGGAGCCCTTGTTCTAGCCGACAGAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGACCAAGATAGGGTGAGTATCCACGAAGCCATGGAGCAGCAGAGTATTAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTAATTGCTGCAGCAAATCCTGTTGGAGGAAGATATGATTCCTCGAAAACATTCTCTCAGAATGTTGAATTGACAGATCCTATTATTTCTCGTTTTGATGTCCTCTGCGTTGTGAAGGATGTTGTTGATCCCGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAACCAAGATGATAAGTCCTTTAGTGAGTCCCAAGATGTCCATGCATCCGCTGTGCCAGCTGATCCAGAGATACTTCCTCAGGATCTACTGAAGAAGTACATTACATATGCGAAATTGAATATTTTTCCAAGGTTGCAAGATGCCGATATGGATAAACTGTCTCATGTATATGCAGAATTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGACACATCGAATCCATGATACGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGACAGCATGTTACACAAGAGGACGTTGACATGGCAATTCGTGTTCTACTTGAATCATTTATTTCAACACAGAAGTTTGGGGTTCAGAAGGCTCTTCAAAAGAGCTTTAGAAAGTACATGACTTTCAAGAAGGACTATAATGAACTGCTGCTTTATATTCTCCGGGAGCTTGTAAAGAATGCTATGCATTTTGAAGAAATTGTGACCGGGTCTACTTCAGGGCTAACTTATGTAGATGTTAAAGTAGATGATCTGTACAATAAGGCTCAAGAACATGACATCTATGATCTGAAACCATTCTTCAACAGCACCCAGTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAAAGTCATCAGGCATCGCCTTGTTTGA 2793 0.44 MEPGSPSSPDPESPSSPSVGFNTDQIPHTHTSRASEDDEASVDPNIVPDDREEPPEEEEDGEDLFNDNFMDDYRRMDEADQFEDFGLDDKFEDDRDFDQIMEDRRAAEMEIDAREGRTTNRNKLPQLLHDQDTDDDSHRPSKRARADFRASLPSDDDMQSSPGRSRGHSREDFHTTDQTEDDRDDDDFDDGYEMYQVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDMAEIENLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPITREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDVLCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANQDDKSFSESQDVHASAVPADPEILPQDLLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNAMHFEEIVTGSTSGLTYVDVKVDDLYNKAQEHDIYDLKPFFNSTQFSRANFVLDEERKVIRHRLV 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05630 930 Gene3D - 475 848 IPR027417 -
Viun3g05630 930 ProSitePatterns MCM family signature. 604 612 IPR018525 GO:0003677|GO:0005524|GO:0006260
Viun3g05630 930 FunFam DNA helicase 475 848 - -
Viun3g05630 930 SMART mcm 312 826 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 201 873 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 MobiDBLite consensus disorder prediction 50 66 - -
Viun3g05630 930 Pfam MCM N-terminal domain 216 309 IPR027925 -
Viun3g05630 930 MobiDBLite consensus disorder prediction 30 49 - -
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein family signature 675 683 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein family signature 624 637 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein family signature 596 610 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 551 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein family signature 648 660 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 MobiDBLite consensus disorder prediction 1 191 - -
Viun3g05630 930 FunFam DNA helicase 208 312 - -
Viun3g05630 930 Gene3D - 343 393 - -
Viun3g05630 930 MobiDBLite consensus disorder prediction 92 119 - -
Viun3g05630 930 MobiDBLite consensus disorder prediction 67 81 - -
Viun3g05630 930 Gene3D - 316 441 IPR012340 -
Viun3g05630 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 828 IPR027417 -
Viun3g05630 930 Pfam Mini-chromosome maintenance protein 2 36 184 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Viun3g05630 930 CDD MCM2 498 824 - -
Viun3g05630 930 SUPERFAMILY Nucleic acid-binding proteins 217 464 IPR012340 -
Viun3g05630 930 Pfam MCM OB domain 315 442 IPR033762 -
Viun3g05630 930 Gene3D - 208 312 - -
Viun3g05630 930 MobiDBLite consensus disorder prediction 127 152 - -
Viun3g05630 930 MobiDBLite consensus disorder prediction 161 177 - -
Viun3g05630 930 Pfam MCM P-loop domain 483 705 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 Pfam MCM AAA-lid domain 741 825 IPR041562 -
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 459 470 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 444 455 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 325 342 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 348 360 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Viun3g05630 930 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 383 397 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Viun3g05630 930 FunFam DNA helicase 343 393 - -
Viun3g05630 930 ProSiteProfiles MCM family domain profile. 495 701 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g05630 930 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05630 Viun-Chr3 61974798 61979921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05630 20 926 Core DNA Replication Machinery Family AT1G44900 75.354 0.0 1361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05630 K02540 - gmx:100799441 1696.4