Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05629 ATGATCAGAAACCCGACAACAGCGAGCACGGAGCGGTCACGTGACGCGAAGAGAAGAAAGAAGAAGAAAACACAGGAACGCGAGGATGAGAAGCAGCCCAAGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTCAACAACCTCGGCTCCGCCTCGCCCAAAGGCAAAGCCGTGCGCCAAGCCGCGGACAGAGTCCTCGCCGCCACGGCCAAGGGGAGGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACCAAACACAAGAGACAGAGAGTGGCCGCGACGCTCCCTAGCCGCTCAAAGAGAGCTCGCGTGAGCGTTCACCGGCTGAAGGGGAAGGGTGGAGCGGGTGTGCAGAGGAAAGTTAGGTTCCTGGGACGGTTGGTTCCCGGTTGCCGGAAAGAACCGTTACCGGTTGTTCTTGAAGAAGCCATCGATTACATACCCGCTCTTGAGATGCAGGTTCGAGCCATGAACGCTCTCTTTAACCTTCTCTCCGCTGCTTCTTCTTCTTCTTCTTCTTCCTCGTAA 576 0.5712 MIRNPTTASTERSRDAKRRKKKKTQEREDEKQPKWKSQAQQQIYSSKLRQALARVNNLGSASPKGKAVRQAADRVLAATAKGRTRWSRAILTNRLKLKFTKHKRQRVAATLPSRSKRARVSVHRLKGKGGAGVQRKVRFLGRLVPGCRKEPLPVVLEEAIDYIPALEMQVRAMNALFNLLSAASSSSSSSS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05629 191 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 37 183 IPR044660 GO:0006355
Viun3g05629 191 MobiDBLite consensus disorder prediction 1 41 - -
Viun3g05629 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 182 IPR036638 GO:0046983
Viun3g05629 191 CDD bHLH_AtIBH1_like 124 176 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05629 Viun-Chr3 61970164 61971135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05629 30 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 53.143 1.87e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05629 - - pvu:PHAVU_003G116200g 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05629 3 61970164 61971135 Viun6g01864 6 25696528 25697699 PCT