Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05628 ATGGAGGAGAAGAGAGAGAAAGAAGCGAACTCAAAGTCATCATCATCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATGCCCATCACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCCTCTTCGACATCATGCCACCTCTTCCACCACCACCATCTTCATCCTTCGCTCACGATCCAAAAGCTTCAAACTTTCCCTTCATGGACTTGCTGGGTGTGCCTGATTATACCCCTTCCTTATTCGACTGGCCGCAAAACACCGCCGTCACCTCACCGCCACCGCTGCCAGCCCCCACCCAAATCACCCACGCGCTTCCCTCGCCGGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACCCCGCCGTCGCCCAACTACTCCTCGATTTCCTCCTCCTCGAATGAGGCCGCCGCGGCCGCCGCCAACAAAGCAACTGGAAATGAAGATGAAGCGGAGGAGGATGAAACGGCAACGGATGCAGCGGGAAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGCCGAAGCCAAAAAAGAAGCACCAAAAGAAGCCAAGAGAACCAAGATTTGCGTTCAAAACAAAGAGTGAAGTGGATCACCTCGACGACGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCCGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAATGCGTTCGGACCCAGCGGTGGACTCTTCATGCTGCAACAACAACAACACCAACAGTTTCGTCATGACCAAGCACAAGCACAAGCACAAGCTCAAGCTCAAGTAGCAATGTTATACAACTCGAACAGTAGCAGCACCTCGTGTTCATCATCACCTCTGAATGTTGTTAACTCAGGTAGTTGCGTAAACAAGTATGGCAATACGTCGTCGTTGAATGCGTTCCTTCAGAGGCAAGAGAATGAGCGTGGTTTTGCGGTATCGAGTATGGGAGGTCCTCAGGGTTTGTTCAATGGGCTTCTTCAGGACATTGTTCCAACGCAGATGATGAGTGAAGAGAGGGGCGATCGTGTGTAG 1212 0.5355 MEEKREKEANSKSSSSSSTMANSVAFSDEIPNMPITMSFPFSPAFSTLFDIMPPLPPPPSSSFAHDPKASNFPFMDLLGVPDYTPSLFDWPQNTAVTSPPPLPAPTQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAANKATGNEDEAEEDETATDAAGKGEDQDQDKSKNQPKPKKKHQKKPREPRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFLHSEPNAFGPSGGLFMLQQQQHQQFRHDQAQAQAQAQAQVAMLYNSNSSSTSCSSSPLNVVNSGSCVNKYGNTSSLNAFLQRQENERGFAVSSMGGPQGLFNGLLQDIVPTQMMSEERGDRV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05628 403 MobiDBLite consensus disorder prediction 110 150 - -
Viun3g05628 403 MobiDBLite consensus disorder prediction 91 208 - -
Viun3g05628 403 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05628 403 SMART WRKY_cls 212 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05628 403 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g05628 403 MobiDBLite consensus disorder prediction 167 185 - -
Viun3g05628 403 SUPERFAMILY WRKY DNA-binding domain 205 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05628 403 ProSiteProfiles WRKY domain profile. 207 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05628 403 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 119 312 IPR044810 GO:0003700
Viun3g05628 403 Gene3D WRKY domain 198 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05628 403 FunFam WRKY transcription factor 57 198 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05628 Viun-Chr3 61938728 61940900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05628 182 398 WRKY Transcription Factor Family AT2G47260 46.188 2.87e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g05628 WRKY 2.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05628 - - gmx:100808190 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05628 3 61938728 61940900 Viun3g05628 3 61938728 61940900 ECH
Viun6g01866 6 25742838 25745327 Viun3g05628 3 61938728 61940900 PCT