Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05627 ATGAGCTACCACAACACGCGCCGGAGCCCTTCCGGTTTCCGCTCTGGCGCTGCCCCTAACCACCGCGCCTTCGACAGTCCTCCGCGTCGCTCTCCTGGAAGGGGAGGAGGATTCCGGCCGATGGGCGGGGAAGGTCCTGGGGAATTCGGATTCAACGGCCAGCAGCCACCGCCGCCGCTGGTTGGGCAGAAACGAGGGTTTCCTGTTGCCGGACGCGGAGGCGGTTCACCCGATCGTTTAGATGGTGGAAATTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGCCCGTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCTATACAAGTGCGATATGCTGACGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAGCAGGCTTCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGTGATGAAAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCATACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGACTCTACACAATGAGAGGTTGTGAGCAAGCACTAATTGTTCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATACACCAGGCTCAAGACTTCCATCCAATGTTTCAGATCCTATGGGTGATCGAATGCCTCCCCCTAATCCGTGGCGACCAATGCAACCCCCAAATATGGGGCCATCAACTAATGCTGGTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGCATTGTCTACAAATGCGGGCGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCACACAATCAACAAATATCACCCTTGCAGAAACCTATTCAATCATCACAGGAGTTGCCACCATCCCATCAATTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTGTTAGACAGCATGGCCAGCCACATCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACATGGACAAGTTCCTCCCTCCGTGCCTCAACAGGCTATTCAGCAATCCCCTTCTCCCACAGTTCAGATGCTATCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAACTGCAGATGATGCAGCCTTCTAGTCAAGCATTATCATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGTTGGGACTGTAGCACAAACAGTGGCCAGCACTCATGCAACTGCACCTGCTGCAGACGCCCCTTCATCCAAACTTGCTACTTCAGCCTTACCAGCGATAAACCATAACTCGGCTCTCGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATTTGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTTGGTACTACCTGTCCATCAGATTCCACAGTTCCAACAGGTTCAGCCTCAGAGTCATCTCCAAGGACAAGTTCTTCACCAGCAACAAGCACAACAGCCTCCTCTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGCCAACTATTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTTCAGGAGTATGA 2076 0.4827 MSYHNTRRSPSGFRSGAAPNHRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGQQPPPPLVGQKRGFPVAGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSYRDMALAAINALDGLYTMRGCEQALIVRFADPKRPRQGDSRGQAFGGPGFGPRFDTPGSRLPSNVSDPMGDRMPPPNPWRPMQPPNMGPSTNAGLHGMGPPMLPRSGEMALSTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQPMPQIPPHNQQISPLQKPIQSSQELPPSHQLYPQAPVPYPQTSVRQHGQPHLPPSAGPLQSQQIHGQVPPSVPQQAIQQSPSPTVQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALSLQQNAEATKKQSQWVGTVAQTVASTHATAPAADAPSSKLATSALPAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLFEQQQQRVSVQQSQTQSQPLVLPVHQIPQFQQVQPQSHLQGQVLHQQQAQQPPLSSSFQAYGVTGPQNVQEVGYKQLQPTIISAGDPGRYSQGVHSTQELMWKNKPSGV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05627 691 ProSiteProfiles WW/rsp5/WWP domain profile. 552 579 IPR001202 GO:0005515
Viun3g05627 691 PANTHER RNA BINDING PROTEIN 46 499 - -
Viun3g05627 691 MobiDBLite consensus disorder prediction 294 310 - -
Viun3g05627 691 SUPERFAMILY WW domain 551 584 IPR036020 GO:0005515
Viun3g05627 691 Gene3D - 545 595 - -
Viun3g05627 691 ProSitePatterns WW/rsp5/WWP domain signature. 552 577 IPR001202 GO:0005515
Viun3g05627 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Viun3g05627 691 SMART ww_5 547 579 IPR001202 GO:0005515
Viun3g05627 691 SMART rrm1_1 87 163 IPR000504 GO:0003723
Viun3g05627 691 SMART rrm1_1 178 253 IPR000504 GO:0003723
Viun3g05627 691 SUPERFAMILY RNA-binding domain, RBD 177 279 IPR035979 GO:0003676
Viun3g05627 691 MobiDBLite consensus disorder prediction 1 83 - -
Viun3g05627 691 CDD WW 549 579 IPR001202 GO:0005515
Viun3g05627 691 FunFam Flowering time control protein FCA 173 263 - -
Viun3g05627 691 SUPERFAMILY RNA-binding domain, RBD 28 165 IPR035979 GO:0003676
Viun3g05627 691 Gene3D - 174 266 IPR012677 -
Viun3g05627 691 MobiDBLite consensus disorder prediction 357 454 - -
Viun3g05627 691 MobiDBLite consensus disorder prediction 257 454 - -
Viun3g05627 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Viun3g05627 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Viun3g05627 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 247 IPR000504 GO:0003723
Viun3g05627 691 Pfam WW domain 551 577 IPR001202 GO:0005515
Viun3g05627 691 FunFam flowering time control protein FCA isoform X2 80 172 - -
Viun3g05627 691 Gene3D - 81 173 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05627 Viun-Chr3 61922634 61933358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05627 88 240 Eukaryotic Initiation Factors Gene Family AT4G34110 27.097 1.61e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05627 - - gmx:100798390 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05627 3 61922634 61933358 Viun3g05627 3 61922634 61933358 ECH