Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05626 ATGAGCTACCACAACACGCGCCGGAGCCCTTCCGGTTTCCGCTCTGGCGCTGCCCCTAACCACCGCGCCTTCGACAGTCCTCCGCGTCGCTCTCCTGGAAGGGGAGGAGGATTCCGGCCGATGGGCGGGGAAGGTCCTGGGGAATTCGGATTCAACGGCCAGCAGCCACCGCCGCCGCTGGTTGGGCAGAAACGAGGGTTTCCTGTTGCCGGACGCGGAGGCGGTTCACCCGATCGTTTAGATGGTGGAAATTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGCCCGTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCTATACAAGTGCGATATGCTGACGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAGCAGGCTTCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGTGATGAAAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCATACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGACTCTACACAATGAGAGGTTGTGAGCAAGCACTAATTGTTCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATACACCAGGCTCAAGACTTCCATCCAATGTTTCAGATCCTATGGGTGATCGAATGCCTCCCCCTAATCCGTGGCGACCAATGCAACCCCCAAATATGGGGCCATCAACTAATGCTGGTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGCATTGTCTACAAATGCGGGCGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCACACAATCAACAAATATCACCCTTGCAGAAACCTATTCAATCATCACAGGAGTTGCCACCATCCCATCAATTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTGTTAGACAGCATGGCCAGCCACATCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACCAAATGCTTTGTCTGCTGCATTTCCTCAGGCTCCTCTTGACACCAGCATGCAATCTAATACTTTGTTAGCTACAAATCAACAGCAAGTTCCTCCCTCCGTGCCTCAACAGGCTATTCAGCAATCCCCTTCTCCCACAGTTCAGATGCTATCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAACTGCAGATGATGCAGCCTTCTAGTCAAGCATTATCATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGTTGGGACTGTAGCACAAACAGTGGCCAGCACTCATGCAACTGCACCTGCTGCAGACGCCCCTTCATCCAAACTTGCTACTTCAGCCTTACCAGCGATAAACCATAACTCGGCTCTCGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATTTGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTTGGTACTACCTGTCCATCAGATTCCACAGTTCCAACAGGTTCAGCCTCAGAGTCATCTCCAAGGACAAGTTCTTCACCAGCAACAAGCACAACAGCCTCCTCTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGCCAACTATTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTTCAGGAGTATGA 2199 0.4798 MSYHNTRRSPSGFRSGAAPNHRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGQQPPPPLVGQKRGFPVAGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSYRDMALAAINALDGLYTMRGCEQALIVRFADPKRPRQGDSRGQAFGGPGFGPRFDTPGSRLPSNVSDPMGDRMPPPNPWRPMQPPNMGPSTNAGLHGMGPPMLPRSGEMALSTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQPMPQIPPHNQQISPLQKPIQSSQELPPSHQLYPQAPVPYPQTSVRQHGQPHLPPSAGPLQSQQIHGVSGQFPTSQPQTQPNALSAAFPQAPLDTSMQSNTLLATNQQQVPPSVPQQAIQQSPSPTVQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALSLQQNAEATKKQSQWVGTVAQTVASTHATAPAADAPSSKLATSALPAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLFEQQQQRVSVQQSQTQSQPLVLPVHQIPQFQQVQPQSHLQGQVLHQQQAQQPPLSSSFQAYGVTGPQNVQEVGYKQLQPTIISAGDPGRYSQGVHSTQELMWKNKPSGV 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05626 732 MobiDBLite consensus disorder prediction 294 310 - -
Viun3g05626 732 SMART ww_5 588 620 IPR001202 GO:0005515
Viun3g05626 732 Gene3D - 81 174 IPR012677 -
Viun3g05626 732 ProSiteProfiles WW/rsp5/WWP domain profile. 593 620 IPR001202 GO:0005515
Viun3g05626 732 PANTHER RNA BINDING PROTEIN 46 530 - -
Viun3g05626 732 CDD WW 590 620 IPR001202 GO:0005515
Viun3g05626 732 Gene3D - 175 265 IPR012677 -
Viun3g05626 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Viun3g05626 732 SMART rrm1_1 178 253 IPR000504 GO:0003723
Viun3g05626 732 SMART rrm1_1 87 163 IPR000504 GO:0003723
Viun3g05626 732 MobiDBLite consensus disorder prediction 1 83 - -
Viun3g05626 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 247 IPR000504 GO:0003723
Viun3g05626 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Viun3g05626 732 Gene3D - 586 636 - -
Viun3g05626 732 FunFam Flowering time control protein FCA 173 263 - -
Viun3g05626 732 SUPERFAMILY WW domain 592 625 IPR036020 GO:0005515
Viun3g05626 732 SUPERFAMILY RNA-binding domain, RBD 177 279 IPR035979 GO:0003676
Viun3g05626 732 SUPERFAMILY RNA-binding domain, RBD 28 165 IPR035979 GO:0003676
Viun3g05626 732 MobiDBLite consensus disorder prediction 357 452 - -
Viun3g05626 732 FunFam flowering time control protein FCA isoform X2 80 172 - -
Viun3g05626 732 ProSitePatterns WW/rsp5/WWP domain signature. 593 618 IPR001202 GO:0005515
Viun3g05626 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Viun3g05626 732 MobiDBLite consensus disorder prediction 257 452 - -
Viun3g05626 732 Pfam WW domain 592 618 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05626 Viun-Chr3 61922633 61933358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05626 88 240 Eukaryotic Initiation Factors Gene Family AT4G34110 27.097 1.81e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05626 - - gmx:100798390 1080.47