Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05609 ATGGATGAAAAAGGAAGAACAACAAGCCTTTTGAGTGAGGACGAGATGGAGCTTCGAAGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCAGGGCTCAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTCGAGGAACAACTTTTGATCCTCGAACTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATCTGCCTGGTAGAACGGACAATGAGATAAAGAACTATTGGAGAACTCGTGTCCAGAAGCATGCCAAACAACTCAAATGTGACGTCAACAGCAAACAATTCAAGGACGCCATGCGTTACCTCTGGATGCCCAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCAACCGCAACCGCCTCAGTCACCACCAACGATGCGTACACCTCTGAGAACAACCTTAAAAACAACCACATGGAGGTTCATAATAATCTCAAGGAAAAAATGGGATTCATCGAACCTTCACCACCCATGAACAACGACTTCGTGGCTTCCTACGTCATGCAAAGTCACACCCCAGACAACAGTAGCACGGCTTTGTCTTCATCGGACTCGTTCGGGACTCAAGTCTCGACAAAATCTGATCTCACTGATTATTACAGCGTTCCGGTTAGCAGTAACAATAACAACACTGCTACTCCTGCGGATTATTACCAACCCTCTCAGATCAATTGCATCACAGGCACACCCGGGTTTTTCCCTCCGGGATTGGATTTTCAATCCCTAGATCCCTGGAACCTGCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTTGAGAACATGTTCTTCTTGGAGCAACATCTCATGAACGACAACATGTGA 945 0.4836 MDEKGRTTSLLSEDEMELRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAATATATASVTTNDAYTSENNLKNNHMEVHNNLKEKMGFIEPSPPMNNDFVASYVMQSHTPDNSSTALSSSDSFGTQVSTKSDLTDYYSVPVSSNNNNTATPADYYQPSQINCITGTPGFFPPGLDFQSLDPWNLQNGDSSDNFWNVENMFFLEQHLMNDNM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05609 314 CDD SANT 93 116 IPR001005 -
Viun3g05609 314 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 205 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun3g05609 314 SMART sant 19 69 IPR001005 -
Viun3g05609 314 SMART sant 72 120 IPR001005 -
Viun3g05609 314 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Viun3g05609 314 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Viun3g05609 314 Gene3D - 77 140 - -
Viun3g05609 314 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Viun3g05609 314 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Viun3g05609 314 CDD SANT 22 67 IPR001005 -
Viun3g05609 314 FunFam Myb transcription factor 20 72 - -
Viun3g05609 314 Gene3D - 17 73 - -
Viun3g05609 314 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Viun3g05609 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Viun3g05609 314 FunFam MYB transcription factor 77 140 - -
Viun3g05609 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05609 Viun-Chr3 61820901 61822716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05609 1 262 MYB Transcription Factor Family AT3G06490 59.707 3.15e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g05609 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05609 K09422 - gmx:100791349 470.314