Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05603 ATGATCGTGAGCCCGAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGACCATTCCGATGTTGGACGTGAAGTATCATATTTGCGTTGCGCAAGAACACAACGTTGAGGTCGAGGTTTCACCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCACTCTGATTTCATTAAACATTCCATTTCCGAGACCCCTGAGGCGAGTTTTGTTCCAAAAGCGCGTTCTGGTAGCTATGCTGAGATTGGGCCGCGAGTTTCTATGGATGATGAACACATCTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCATTTTATGCAGTTTTTGATGGTCATGGGGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAAATTGTTTTTTGAAGATGCGGACATGCTGCAGACATATGATACTGATGCATTCTTTCTAGAGAAGTTAGAGGATTCCCATAGGAGAGCTTTTCTACGGGCAGATCTTGCCTTGGCTGATGAGCAAACCGTTAGTAGTTCGTGTGGAACGACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGATTGCCGCGCAGTTCTTTGCCGGAGGGGTGTGGCTGTTGACATGTCTAATGATCACAGGCCAAGTTTTCTGCCAGAACGGCGGAGGGTGGAGGAGGTTGGTGGATTCATTGATGATATATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTAATTGCTGAGCCAGATGTTCGACTGGCTACATTGACCGAGGAGGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATATCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATAACGACCCAAAGCAGTGTGCTATGGAACTAGTCAAGGAAGCATTGCGCCTACATACATCGGATAATCTCACTGTGATTGTTGTATGTTTGGCACCCATTGAAAGCATTGTTGAATCATGTCCACCCCAGAGACGAAGATTCAAAGCTTGCAACCTGTCCGAAGAGGCCCGTAATAGGTTGAAGAGCTTCATTGAGCGAAATTGA 1161 0.4668 MIVSPKMVAEAEIICQQTIPMLDVKYHICVAQEHNVEVEVSPKSPSPSVPIFGQAVNHSDFIKHSISETPEASFVPKARSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPDAAAFVKRNAMKLFFEDADMLQTYDTDAFFLEKLEDSHRRAFLRADLALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVDMSNDHRPSFLPERRRVEEVGGFIDDIYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLATLTEEDEFLIIGCDGIWDVISSQVAVSLVRRGLRRHNDPKQCAMELVKEALRLHTSDNLTVIVVCLAPIESIVESCPPQRRRFKACNLSEEARNRLKSFIERN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05603 386 Gene3D - 58 352 IPR036457 -
Viun3g05603 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Viun3g05603 386 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Viun3g05603 386 SUPERFAMILY PP2C-like 72 350 IPR036457 -
Viun3g05603 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Viun3g05603 386 PANTHER PROTEIN PHOSPHATASE 2C 72 347 IPR015655 GO:0004722|GO:0006470
Viun3g05603 386 SMART PP2C_4 69 347 IPR001932 -
Viun3g05603 386 CDD PP2Cc 79 349 IPR001932 -
Viun3g05603 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Viun3g05603 386 FunFam Probable protein phosphatase 2C 22 63 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05603 Viun-Chr3 61763954 61766698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05603 1 383 PP2C-type Phosphatase Gene Family AT1G48040 56.853 1.61e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05603 K14803 - gmx:100775577 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05603 3 61763954 61766698 Viun3g05603 3 61763954 61766698 ECH