Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05589 ATGCTTGACCAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGCTGCAAATCTAGCATCTCACCTTTTCCGGTAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAGAATAAGCACACCGATATCTGTAGTTCAAACATCTTTCACATCAAGTGCAAATAAAGTTGGTCAGAATGGACACTCTTCAGAGTATGAAGATGTCAATTCAAAAGATGGTCCTCAAGCCCCCTCTTTCAAAAGATATCATACTGAAGGATCTGTTGAAGGTTCGGAAGCTGACTTCACTGTTCATCGGCTAAATAACGATAAGATAGATGCTGTTAATAGAATGCAAGATGGTGTAATTTTCAGAGATAGCCACATGTACATACAACAAGTTGAAGAAAATTTACTGACTGTTGATCAGGTGCAAAACCAGGATGGTCTGGATACAATCTGTGCTCAATTATATGATCGTAATGATCATCCAATTGTTGCAAATACCAAAGCGCTAGTTGAACAGAAACTTAAAGATGGGGAATCAAAACAGGCTGAATCTGGGGAAATCAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGAAAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACACTTGGTGCTCATAATGAGGATAAGGAGGTATCTAGTTTACGACACATACAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGAGTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTCGGAAGTAAAAAGCTCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAACTTTAGCAGATAATGTGCTATGGTGTCAGACTCCTTTGCACTCACCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATTTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTACGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGGTGGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTGTTCCATGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTTCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTACTATTTCAGAGATTAACGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGCTGGATGATGAGGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGTCCCATTGATTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTTCATTGGGCATCGTATTTTGGGAGAGAAGAAACTGTTATTGCTCTAGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACATCAGCTCTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATTAATCGATTATCTATACTGACTGTGAAGGAAAATGGAGCTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTAAGTCTGCTGAAGATGACTCGTCTAATTTGACAATGGATGAGCAACACTATCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCGGCTGCTTCAATCCTAGCTGCATTTAGAGCAAGGTCATTCTTTCAGAGACAATTAGCCAAAAGTAAAAGTGATGTTTCAGACTCAGTACTTGACAAAGTTGCCGATTCTTTGGGCAAGGTACAGAACATGAGTCACTTTGAGGATTATTTACATTTTGCAGCCTTGAAGATTCAAAAGAGATATCGCGGATGGAAAGGAAGAAAGGACTTTTTGAAAATAGGCAACTGCATTGTAAAAATCCAGGCTCATATCAGAGGACACCAAGTTCGAAAGCAATACAAAAAATTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCGATTCTTCGGTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGGGCAGCCGGTTGGCATTGATGAGTATGACTTTCTTAGCGTTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTGGATAGAGTCAAGTCCATGGTTCGTAACCCAGATGCAAGGGATCAGTATATGAGGCTCACCATGAAATATCAGAAGTTTAAGATTGTTGATAGCAGAAGCATTCAATCACATGTCGATTAG 2418 0.4103 MLDQQLEHVVLVHYREIKEGCKSSISPFPVVPVTLVGSSQNSSVLSSTRISTPISVVQTSFTSSANKVGQNGHSSEYEDVNSKDGPQAPSFKRYHTEGSVEGSEADFTVHRLNNDKIDAVNRMQDGVIFRDSHMYIQQVEENLLTVDQVQNQDGLDTICAQLYDRNDHPIVANTKALVEQKLKDGESKQAESGEIKKLDSFGRWMDKEIGGDCENSLMASDSGNYWSTLGAHNEDKEVSSLRHIQLDMDSLGPSLSQEQLFSIHDFSPEWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAETLADNVLWCQTPLHSPGRVPFYVTCSNRLACSEVREFQFDEHPTKFLGPLGIKISPEVEVRLQIRLLKLVDLGPDNKWWKCSVSGCEKCKLKGIMCSMRGDSGVFKETFQIDGIDHINPRDVLFQRLTRDKLYEWLIYKVHEGGKGSHVLDDEGQGVIHLAAALGYVWAMVPLIAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLINRLSILTVKENGAGNIATTIATDSAFKSAEDDSSNLTMDEQHYLKESLAVFRKSAHAAASILAAFRARSFFQRQLAKSKSDVSDSVLDKVADSLGKVQNMSHFEDYLHFAALKIQKRYRGWKGRKDFLKIGNCIVKIQAHIRGHQVRKQYKKFVWSVSIVEKAILRWRRKGAGLRGFRGGQPVGIDEYDFLSVGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLTMKYQKFKIVDSRSIQSHVD 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05589 805 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 790 - -
Viun3g05589 805 FunFam Calmodulin-binding transcription activator 2 666 714 - -
Viun3g05589 805 SMART iq_5 689 711 IPR000048 GO:0005515
Viun3g05589 805 SMART iq_5 666 688 IPR000048 GO:0005515
Viun3g05589 805 ProSiteProfiles CG-1 DNA-binding domain profile. 1 23 IPR005559 GO:0003677
Viun3g05589 805 CDD IPT_PCSR 262 329 - -
Viun3g05589 805 ProSiteProfiles IQ motif profile. 667 696 IPR000048 GO:0005515
Viun3g05589 805 FunFam Calmodulin-binding transcription activator 2 256 353 - -
Viun3g05589 805 Pfam IPT/TIG domain 263 340 IPR002909 -
Viun3g05589 805 ProSiteProfiles IQ motif profile. 692 718 IPR000048 GO:0005515
Viun3g05589 805 Pfam IQ calmodulin-binding motif 670 687 IPR000048 GO:0005515
Viun3g05589 805 Pfam IQ calmodulin-binding motif 693 711 IPR000048 GO:0005515
Viun3g05589 805 SUPERFAMILY E set domains 263 348 IPR014756 -
Viun3g05589 805 Gene3D - 438 559 IPR036770 -
Viun3g05589 805 SUPERFAMILY Ankyrin repeat 452 557 IPR036770 -
Viun3g05589 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 718 IPR027417 -
Viun3g05589 805 MobiDBLite consensus disorder prediction 65 89 - -
Viun3g05589 805 ProSiteProfiles Ankyrin repeat profile. 495 527 IPR002110 GO:0005515
Viun3g05589 805 Gene3D Immunoglobulins 256 354 IPR013783 -
Viun3g05589 805 Gene3D - 665 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05589 Viun-Chr3 61595702 61601808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05589 195 793 CAMTA Transcription Factor Family AT5G09410 42.628 8.47e-153 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05589 K21596 - gmx:100818336 1150.19