Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05588 ATGGCTGAGACCACAAAATACATTGCCAACTCAGAATTAGAGCTTGAAGAGATATTGCAAGAAGCATCACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCGCAACTATAAGAAGTTTAAGTTAACACCAGATCCACCTATTAGACCTCCAGCTGGATCACTATTCTTGTTCAATAGAAAAGCACTTCGTTATTTTCGCAAGGATGGTCACAGGTGGAGGAAGAAACAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGTTGGTAGTGTGGATGCCTTGCACTGCTACTATGCCCATGGAGAGGACAATGAAAACTTCCAACGGAGAAGTTTTTGGATGCTTGACCAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGTGCAAAACCAGGATGGTCTGGATACAATCTGTGCTCAATTATATGATCGTAATGATCATCCAATTGTTGCAAATACCAAAGCGCTAGTTGAACAGAAACTTAAAGATGGGGAATCAAAACAGGCTGAATCTGGGGAAATCAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGAAAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACACTTGGTGCTCATAATGAGGATAAGGAGGTATCTAGTTTACGACACATACAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGAGTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTCGGAAGTAAAAAGCTCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAACTTTAGCAGATAATGTGCTATGGTGTCAGACTCCTTTGCACTCACCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATTTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTACGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGGTGGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTGTTCCATGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTTCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTACTATTTCAGAGATTAACGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGCTGGATGATGAGGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGTCCCATTGATTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTTCATTGGGCATCGTATTTTGGGAGAGAAGAAACTGTTATTGCTCTAGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACATCAGCTCTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATTAATCGATTATCTATACTGACTGTGAAGGAAAATGGAGCTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTAAGTCTGCTGAAGATGACTCGTCTAATTTGACAATGGATGAGCAACACTATCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCGGCTGCTTCAATCCTAGCTGCATTTAGAGCAAGGTCATTCTTTCAGAGACAATTAGCCAAAAGTAAAAGTGATGTTTCAGACTCAGTACTTGACAAAGTTGCCGATTCTTTGGGCAAGGTACAGAACATGAGTCACTTTGAGGATTATTTACATTTTGCAGCCTTGAAGATTCAAAAGAGATATCGCGGATGGAAAGGAAGAAAGGACTTTTTGAAAATAGGCAACTGCATTGTAAAAATCCAGGCTCATATCAGAGGACACCAAGTTCGAAAGCAATACAAAAAATTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCGATTCTTCGGTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGGGCAGCCGGTTGGCATTGATGAGTATGACTTTCTTAGCGTTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTGGATAGAGTCAAGTCCATGGTTCGTAACCCAGATGCAAGGGATCAGTATATGAGGCTCACCATGAAATATCAGAAGTTTAAGATTGTTGATAGCAGAAGCATTCAATCACATGTCGATTAG 2385 0.4138 MAETTKYIANSELELEEILQEASHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSLFLFNRKALRYFRKDGHRWRKKQDGKTVREAHEKLKVGSVDALHCYYAHGEDNENFQRRSFWMLDQQLEHVVLVHYREIKEVQNQDGLDTICAQLYDRNDHPIVANTKALVEQKLKDGESKQAESGEIKKLDSFGRWMDKEIGGDCENSLMASDSGNYWSTLGAHNEDKEVSSLRHIQLDMDSLGPSLSQEQLFSIHDFSPEWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAETLADNVLWCQTPLHSPGRVPFYVTCSNRLACSEVREFQFDEHPTKFLGPLGIKISPEVEVRLQIRLLKLVDLGPDNKWWKCSVSGCEKCKLKGIMCSMRGDSGVFKETFQIDGIDHINPRDVLFQRLTRDKLYEWLIYKVHEGGKGSHVLDDEGQGVIHLAAALGYVWAMVPLIAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLINRLSILTVKENGAGNIATTIATDSAFKSAEDDSSNLTMDEQHYLKESLAVFRKSAHAAASILAAFRARSFFQRQLAKSKSDVSDSVLDKVADSLGKVQNMSHFEDYLHFAALKIQKRYRGWKGRKDFLKIGNCIVKIQAHIRGHQVRKQYKKFVWSVSIVEKAILRWRRKGAGLRGFRGGQPVGIDEYDFLSVGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLTMKYQKFKIVDSRSIQSHVD 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05588 794 SMART iq_5 678 700 IPR000048 GO:0005515
Viun3g05588 794 SMART iq_5 655 677 IPR000048 GO:0005515
Viun3g05588 794 Coils Coil 1 21 - -
Viun3g05588 794 SUPERFAMILY E set domains 252 337 IPR014756 -
Viun3g05588 794 SUPERFAMILY Ankyrin repeat 441 546 IPR036770 -
Viun3g05588 794 Gene3D - 654 703 - -
Viun3g05588 794 Gene3D Immunoglobulins 245 343 IPR013783 -
Viun3g05588 794 Pfam IPT/TIG domain 252 329 IPR002909 -
Viun3g05588 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 707 IPR027417 -
Viun3g05588 794 SMART CG_1_2 18 136 IPR005559 GO:0003677
Viun3g05588 794 FunFam Calmodulin-binding transcription activator 2 655 703 - -
Viun3g05588 794 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 167 779 - -
Viun3g05588 794 Pfam IQ calmodulin-binding motif 659 676 IPR000048 GO:0005515
Viun3g05588 794 Pfam IQ calmodulin-binding motif 682 700 IPR000048 GO:0005515
Viun3g05588 794 CDD IPT_PCSR 251 318 - -
Viun3g05588 794 ProSiteProfiles IQ motif profile. 656 685 IPR000048 GO:0005515
Viun3g05588 794 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Viun3g05588 794 Gene3D - 427 548 IPR036770 -
Viun3g05588 794 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Viun3g05588 794 ProSiteProfiles Ankyrin repeat profile. 484 516 IPR002110 GO:0005515
Viun3g05588 794 FunFam Calmodulin-binding transcription activator 2 245 342 - -
Viun3g05588 794 ProSiteProfiles IQ motif profile. 681 707 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05588 Viun-Chr3 61594939 61601808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05588 184 782 CAMTA Transcription Factor Family AT5G09410 42.628 7.48e-152 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g05588 CG-1 1.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05588 K21596 - gmx:100818336 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05588 3 61594939 61601808 Viun3g05588 3 61594939 61601808 ECH