Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05587 ATGGCTGAGACCACAAAATACATTGCCAACTCAGAATTAGAGCTTGAAGAGATATTGCAAGAAGCATCACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCGCAACTATAAGAAGTTTAAGTTAACACCAGATCCACCTATTAGACCTCCAGCTGGATCACTATTCTTGTTCAATAGAAAAGCACTTCGTTATTTTCGCAAGGATGGTCACAGGTGGAGGAAGAAACAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGTTGGTAGTGTGGATGCCTTGCACTGCTACTATGCCCATGGAGAGGACAATGAAAACTTCCAACGGAGAAGTTTTTGGATGCTTGACCAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGCTGCAAATCTAGCATCTCACCTTTTCCGGTAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAGAATAAGCACACCGATATCTGTAGTTCAAACATCTTTCACATCAAGTGCAAATAAAGTTGGTCAGAATGGACACTCTTCAGAGTATGAAGATGTCAATTCAAAAGATGGTCCTCAAGCCCCCTCTTTCAAAAGATATCATACTGAAGGATCTGTTGAAGGTTCGGAAGCTGACTTCACTGTTCATCGGCTAAATAACGATAAGATAGATGCTGTTAATAGAATGCAAGATGGTGTAATTTTCAGAGATAGCCACATGTACATACAACAAGTTGAAGAAAATTTACTGACTGTTGATCAGGTGCAAAACCAGGATGGTCTGGATACAATCTGTGCTCAATTATATGATCGTAATGATCATCCAATTGTTGCAAATACCAAAGCGCTAGTTGAACAGAAACTTAAAGATGGGGAATCAAAACAGGCTGAATCTGGGGAAATCAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGAAAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACACTTGGTGCTCATAATGAGGATAAGGAGGTATCTAGTTTACGACACATACAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGAGTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTCGGAAGTAAAAAGCTCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAACTTTAGCAGATAATGTGCTATGGTGTCAGACTCCTTTGCACTCACCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATTTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTACGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGGTGGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTGTTCCATGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTTCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTACTATTTCAGAGATTAACGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGCTGGATGATGAGGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGTCCCATTGATTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTTCATTGGGCATCGTATTTTGGGAGAGAAGAAACTGTTATTGCTCTAGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACATCAGCTCTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATTAATCGATTATCTATACTGACTGTGAAGGAAAATGGAGCTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTAAGTCTGCTGAAGATGACTCGTCTAATTTGACAATGGATGAGCAACACTATCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCGGCTGCTTCAATCCTAGCTGCATTTAGAGCAAGGTCATTCTTTCAGAGACAATTAGCCAAAAGTAAAAGTGATGTTTCAGACTCAGTACTTGACAAAGTTGCCGATTCTTTGGGCAAGGTACAGAACATGAGTCACTTTGAGGATTATTTACATTTTGCAGCCTTGAAGATTCAAAAGAGATATCGCGGATGGAAAGGAAGAAAGGACTTTTTGAAAATAGGCAACTGCATTGTAAAAATCCAGGCTCATATCAGAGGACACCAAGTTCGAAAGCAATACAAAAAATTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCGATTCTTCGGTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGGGCAGCCGGTTGGCATTGATGAGTATGACTTTCTTAGCGTTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTGGATAGAGTCAAGTCCATGGTTCGTAACCCAGATGCAAGGGATCAGTATATGAGGCTCACCATGAAATATCAGAAGTTTAAGATTGTTGATAGCAGAAGCATTCAATCACATGTCGATTAG 2772 0.4113 MAETTKYIANSELELEEILQEASHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSLFLFNRKALRYFRKDGHRWRKKQDGKTVREAHEKLKVGSVDALHCYYAHGEDNENFQRRSFWMLDQQLEHVVLVHYREIKEGCKSSISPFPVVPVTLVGSSQNSSVLSSTRISTPISVVQTSFTSSANKVGQNGHSSEYEDVNSKDGPQAPSFKRYHTEGSVEGSEADFTVHRLNNDKIDAVNRMQDGVIFRDSHMYIQQVEENLLTVDQVQNQDGLDTICAQLYDRNDHPIVANTKALVEQKLKDGESKQAESGEIKKLDSFGRWMDKEIGGDCENSLMASDSGNYWSTLGAHNEDKEVSSLRHIQLDMDSLGPSLSQEQLFSIHDFSPEWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAETLADNVLWCQTPLHSPGRVPFYVTCSNRLACSEVREFQFDEHPTKFLGPLGIKISPEVEVRLQIRLLKLVDLGPDNKWWKCSVSGCEKCKLKGIMCSMRGDSGVFKETFQIDGIDHINPRDVLFQRLTRDKLYEWLIYKVHEGGKGSHVLDDEGQGVIHLAAALGYVWAMVPLIAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLINRLSILTVKENGAGNIATTIATDSAFKSAEDDSSNLTMDEQHYLKESLAVFRKSAHAAASILAAFRARSFFQRQLAKSKSDVSDSVLDKVADSLGKVQNMSHFEDYLHFAALKIQKRYRGWKGRKDFLKIGNCIVKIQAHIRGHQVRKQYKKFVWSVSIVEKAILRWRRKGAGLRGFRGGQPVGIDEYDFLSVGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLTMKYQKFKIVDSRSIQSHVD 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05587 923 Gene3D - 783 832 - -
Viun3g05587 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 908 - -
Viun3g05587 923 Pfam IQ calmodulin-binding motif 788 805 IPR000048 GO:0005515
Viun3g05587 923 Pfam IQ calmodulin-binding motif 811 829 IPR000048 GO:0005515
Viun3g05587 923 SMART iq_5 784 806 IPR000048 GO:0005515
Viun3g05587 923 SMART iq_5 807 829 IPR000048 GO:0005515
Viun3g05587 923 MobiDBLite consensus disorder prediction 183 207 - -
Viun3g05587 923 FunFam Calmodulin-binding transcription activator 2 374 471 - -
Viun3g05587 923 Coils Coil 1 21 - -
Viun3g05587 923 SUPERFAMILY Ankyrin repeat 570 675 IPR036770 -
Viun3g05587 923 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Viun3g05587 923 SUPERFAMILY E set domains 381 466 IPR014756 -
Viun3g05587 923 Gene3D Immunoglobulins 374 472 IPR013783 -
Viun3g05587 923 Gene3D - 556 677 IPR036770 -
Viun3g05587 923 SMART CG_1_2 18 136 IPR005559 GO:0003677
Viun3g05587 923 Pfam IPT/TIG domain 381 458 IPR002909 -
Viun3g05587 923 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Viun3g05587 923 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Viun3g05587 923 CDD IPT_PCSR 380 447 - -
Viun3g05587 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 836 IPR027417 -
Viun3g05587 923 FunFam Calmodulin-binding transcription activator 2 784 832 - -
Viun3g05587 923 ProSiteProfiles IQ motif profile. 810 836 IPR000048 GO:0005515
Viun3g05587 923 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05587 Viun-Chr3 61594935 61601808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05587 313 911 CAMTA Transcription Factor Family AT5G09410 42.628 3.58e-151 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g05587 CG-1 1.6e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05587 K21596 - gmx:100818336 1150.19