Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05577 ATGGAGGCTGAGTTTGGGGGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGGGAATGGTAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACCGCTCAGCCACTCAATCCAGTGCCATCAGACTGTAGGAGTCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCGAAAAAGACCAATCTTGCAAACGATTTGTCTTCTTCTGTAATCAACCCAGGTGAGGGAAAGAAGGAATTGGAGAAAAGGAGGAGGAGTGTTATAGGGGAAGGTGAAGGGGAGGGGCTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCACGGTTACCCTTTCATGGTGGAAGAAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGAACTACTATTGCTCCTGCTACCACCTCTAACCGTCCCGTTTGTCAGGTGCAAGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGCCGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTGTGGCACTGGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCCAGAGTTTGATGAAGGTAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCATAACAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTGTTAATGAAGGATCTCCTAACGATGGAAGTGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGCTCAGATCATACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACTTGGCAAGTCTGGCTGCTCCAAATAATGGTAGAACTTTAGCCTCCTTATTGGAGAACTCTAAAGGTTTATTAAATGCTGGAACACCTGGAGGTGCTCATGATGAACTCAACCTTAATTCAAACACTCCTGAAGCTTCCAGACCATCTGGTTCTTCCATTAAGATTGATAATGGCTTCATCAGTCAGGACCCTCCAATATCTATGGCACAGTGTGAAACAAGGCCTACTAATGGTGGGACACAAAAATGTATACCTTCAGGTGATGGTGGAGTAGAAAATTTGAGACCACCTTCAGGAGCACCATTCTCAAGTATAAGTCAATCCAGGGGAAGTCTTCCATGCCAATTAACTTCTACTGAGACTACAGTTAGAAGGAACAACTTAAATAACGTTGACCTGAATAATGTATACAGTGATATGCAGAATACTGATGAGAATCATAAGAAGCCTTATCCTCATGTGGCATCAGAGATGGGATTTAGTGATCTTCCCTCATGGCTGCAATGTGCTTCTCTCAAATCAAGTCCTCCACAGACTAGCAGAAACTCAGATTCAACCTCTAACCAGTCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGAAAGGATCCAAGTGATTTTCCCCTTCTTCTCCGATCACAGATTCTTGAGTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATGTATCTTCGTCTTGAAAAATCTGCATGGGAGGAGTTCTACTGTAATCTAGGATCCAGCTTGAGAAAGCTTGTTGGCTCATCAAATCATACATTTTGGAGAACAGGGTGGGTGTTTGCAAGGGTGCAGCACTCTGTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGTTCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGTTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGCAAATGCTAGTTGTCACGATTTGAATGGTGGAGCTGATGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAAATGTAACTGGGAGGGGTTTTATTGAGGTGGAAGATCATGGACTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAGAAGGAAGTCTGTTCAGAGATCTGCAAGCTGGAGAATCTGATTGAGGCTGCTGAAACCACTAAGGATTTCCAGATCAAAAACCAACAAATGGAAGAAAAGACTCAAGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTGGTGTGAAAGTTAGGCTAGGTCCCATGGTTCCAAGCCATGATCTCTTCCAATTTAATAGGTTCTCGTGGCTTGTTGACTTCTCTATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTATTGGATATTATATTTGAAGGGAGTGTTGATGCAGGAGAACAGGCCTCCATTGAGCTTGCATTGTTAGACATGAATCTTTTACACAAAGCTGTGAAGAGAAACAATAGACCTATGGTAGAACTACTATTAAGATTCGTGCCAGTTAAAACATCAGATGGTGGTGACAGTGAAGTGAAGCAAGTTGAAAAGGCCTCTGACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGGCCGAGATAGTGCAGGTTTGAGCCCCAATGATTATGCATGCCTTAGGGGCAATTACTCTTATGTTCAACTTGTCCAGAGAAAGACCAACAAGAGAGGTGAAAGACTACATGTGGTTGATATCCCTAGCACTGTTGCAGAAAGTGGTAACAGAAAGCAGAAGCAATCAGATGGATATAGAACAGGTAAAGTTTGTAGTTTACAGACAGAGAAGATTGAAACCACAGAAATGAGAAGTGAATGCAGGGTATGCCAGCAGAAGGTGGTTTATGGTGGCATAAGAAGTGGTGTGGTTTATAGGCCAGTGTTGGTCTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTTCAGCCTTTCAATTGGGAATCATTGGAGTATGGAACAATATAA 3120 0.4337 MEAEFGGKNQYLYGPVVSGMKKAVGNGKRSLEWDLNDWKWDGDLFTAQPLNPVPSDCRSRQFFPPHPEIPAKKTNLANDLSSSVINPGEGKKELEKRRRSVIGEGEGEGLNDEGGSLSLNLGGHGYPFMVEEEEKSGKKTKVIGTTIAPATTSNRPVCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGNVMQRFCQQCSRFHVLPEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSPNDGSGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASLAAPNNGRTLASLLENSKGLLNAGTPGGAHDELNLNSNTPEASRPSGSSIKIDNGFISQDPPISMAQCETRPTNGGTQKCIPSGDGGVENLRPPSGAPFSSISQSRGSLPCQLTSTETTVRRNNLNNVDLNNVYSDMQNTDENHKKPYPHVASEMGFSDLPSWLQCASLKSSPPQTSRNSDSTSNQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPLLLRSQILEWLSHSPTEIESYIRPGCIILTMYLRLEKSAWEEFYCNLGSSLRKLVGSSNHTFWRTGWVFARVQHSVAFLYNGQVVLDVPLCLKSSHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYLANASCHDLNGGADESIQHLNFSCHIPNVTGRGFIEVEDHGLSSCSFPFIVAEKEVCSEICKLENLIEAAETTKDFQIKNQQMEEKTQALHFLQEMGWLLHRSGVKVRLGPMVPSHDLFQFNRFSWLVDFSMDHGWCAVMKKLLDIIFEGSVDAGEQASIELALLDMNLLHKAVKRNNRPMVELLLRFVPVKTSDGGDSEVKQVEKASDRFLFRPDTVGPAGLTPLHVAASMSGSENVLDALTDDPGMVGIEVWKSGRDSAGLSPNDYACLRGNYSYVQLVQRKTNKRGERLHVVDIPSTVAESGNRKQKQSDGYRTGKVCSLQTEKIETTEMRSECRVCQQKVVYGGIRSGVVYRPVLVSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05577 1039 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Viun3g05577 1039 SUPERFAMILY Ankyrin repeat 806 920 IPR036770 -
Viun3g05577 1039 Pfam SBP domain 158 231 IPR004333 GO:0003677
Viun3g05577 1039 MobiDBLite consensus disorder prediction 310 335 - -
Viun3g05577 1039 FunFam Squamosa promoter-binding-like protein 14 150 219 - -
Viun3g05577 1039 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Viun3g05577 1039 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 116 922 IPR044817 GO:0003677
Viun3g05577 1039 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Viun3g05577 1039 MobiDBLite consensus disorder prediction 318 335 - -
Viun3g05577 1039 MobiDBLite consensus disorder prediction 222 245 - -
Viun3g05577 1039 MobiDBLite consensus disorder prediction 455 484 - -
Viun3g05577 1039 Gene3D - 777 955 IPR036770 -
Viun3g05577 1039 SMART ANK_2a 861 891 IPR002110 GO:0005515
Viun3g05577 1039 SMART ANK_2a 805 834 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05577 Viun-Chr3 61510899 61517086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05577 182 1038 SBP-box Gene Family AT2G47070 47.350 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun3g05577 SBP 9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05577 - - gsj:114419913 1637.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05577 3 61510899 61517086 Viun3g05577 3 61510899 61517086 ECH
Viun3g05577 3 61510899 61517086 Viun9g00594 9 4366266 4375693 PCT