Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05566 ATGCGACTTGGGAAATACGAGTTGGGTAGGACCCTGGGTGAAGGCAATTTTGGCAAAGTCAAGTTTGCTAAGAACACTGATTCTGGTCAACCTTTTGCTGTTAAGATCATCGAGAAGAACAACATCATCGACCTAAACATAACCAATCAGATAAAGAGGGAAATAGCCGCCTTAAAGCTCCTCAGACATCCCAACGTTGTTAGATTATACGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTATGTGAATGGAGGAGAGTTATTTGGCATAATTGCATCCAAAGGTAAACGTTCAGAAAGTGAATGTAGAAAGCTGTTCCAACAGTTGATTGATGGAGTGAGCTACTGTCACACCAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTGGTGGATAACAAAGGAAACTTGAAAATAACTGATTTTGGTCTTAGTGCTTTACCCCAGCATCTTAGGGGGGATGGATTGCTGCATACAACTTGTGGAAGTCCTAATTATGTTGCTCCTGAGGTTCTTGCTAATAAGGGCTATGATGGTGCAACATCGGATACATGGTCATGTGGTGTTCTATTATATGTAATCCTAACCGGGTGTTTACCTTTTGATGACAGAAATATGGTAGTTCTATATCAGAAGATTTTCAAAGGAGATTTTCGGATACCAAAAGGGCTATCACCAGGTGCACAAGACTTGATAAAGAAGATCCTTGATCCCAACCCTGAAAAACGGATAACAATGGCTGGGATCAAAGAAGATCCCTGGTTTAAGAAGGGTTATGTTCCAGCAAATGCTGAAGATGAGGATGTATATGTTGACAATGAAGCATTTTCCATGCATGAAGCAGAACAGAAGAATTCAGGATCATCACCAAACCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTTTCTGAGAGAAAGATAAGGTTTACATCAAATCTTTCGGTTAAAGATCTGATTGAGAGGATTGAGGACACTGTGACAGATATGGAATTTATAGTCCAGAGGAAAAATGGCAAATTGAAAGTGATTTGGGAGAACAAGGTGCACAGAACTAGTGGGTGCCTTTCAGTGGCAGTAGAGGTTTTTGAAGTAAGCTCATCACTGAACGTGGTAGAATTAAGAAAATCTTGTGGTGATGCTTCTGTATATAAACAGTTATGCAGTAAATTATTGAATGATTTGAGTGTTCCCCCAAGCGAGCGCTTGTGA 1269 0.4035 MRLGKYELGRTLGEGNFGKVKFAKNTDSGQPFAVKIIEKNNIIDLNITNQIKREIAALKLLRHPNVVRLYEVLASKTKIYMVLEYVNGGELFGIIASKGKRSESECRKLFQQLIDGVSYCHTKGVFHRDLKLENVLVDNKGNLKITDFGLSALPQHLRGDGLLHTTCGSPNYVAPEVLANKGYDGATSDTWSCGVLLYVILTGCLPFDDRNMVVLYQKIFKGDFRIPKGLSPGAQDLIKKILDPNPEKRITMAGIKEDPWFKKGYVPANAEDEDVYVDNEAFSMHEAEQKNSGSSPNLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSVKDLIERIEDTVTDMEFIVQRKNGKLKVIWENKVHRTSGCLSVAVEVFEVSSSLNVVELRKSCGDASVYKQLCSKLLNDLSVPPSERL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05566 422 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Viun3g05566 422 FunFam Non-specific serine/threonine protein kinase 296 417 - -
Viun3g05566 422 Gene3D Kinase associated domain 1, KA1 294 416 - -
Viun3g05566 422 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05566 422 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05566 422 Gene3D Transferase(Phosphotransferase) domain 1 86 266 - -
Viun3g05566 422 CDD CIPK_C 300 411 - -
Viun3g05566 422 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Viun3g05566 422 Pfam NAF domain 296 354 IPR004041 GO:0007165
Viun3g05566 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 400 - -
Viun3g05566 422 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Viun3g05566 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Viun3g05566 422 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05566 422 FunFam Non-specific serine/threonine protein kinase 1 297 - -
Viun3g05566 422 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
Viun3g05566 422 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05566 Viun-Chr3 61449120 61453256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05566 69 421 CBL-interacting serine-threonine protein kinases AT3G17510 64.804 2.09e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun3g05566 Pkinase 2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05566 K07198 - gmx:100777468 729.554