Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05559 ATGGAAGGGGATAACAGTTTGAACGAAGTTACTAACAACAATCAAGAATCAAAGTCCAGGAAGTCTAAAGATGAACCCGTCAAAACAGTACCCTTATACAAGCTTTTCTCTTTTGCCGATTCTTTGGATCACTTGTTGATGTTGGTGGGCACTGTGGGCGCTGTGGGGAATGGAATCTCCATGCCCTTGATGACTTTGATATTCGGAAGCATGATCAATGCATTTGGAGGATCCAGTACCACGGCCGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTGCTGCATCACTTTTGCAGTTGGCATGCTGGATGATCACTGGAGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTCTGAGGCAAGATGTGACCTTCTTTGATAAAGAGACCAACACCGGAGAGGTTATTGGAAGGATGTCAGGTGACACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTATTCAGTTAATGGCAACTTTCATTGGAGGATTTGTTGTGGCGTTCATCAAGGGGTGGCTTCTAACTGTTGTCATGCTGTCTTGTATACCACTTCTTGTCTTGTCCGGGGCTCTGATGAGCCTGGTTATTACAAAAGCGTCATCCAGGGGACAAACTGCTTATTCCAAAGCTTCAAGTGTTGTAGAGCAGACAATTGGCTCTATCCGAACCGTTGCATCATTCACTGGGGAGAAGCTAGCAATAGCTAAATACAATCAGTCCTTAATCAAGGCTTATATCAATGGAGTGCAGGAGGCAGTGGCTTCTGGTTTGGGTTTTGGTATGCTATACTTTGTGTTTATCTGCAGCTATGCTTTGGGCATTTGGTTTGGCGCGAAAATGATCATCGAGAAAGGATACACAGGAGGAGAGGTTGTGACAGTTATATTTGCTGTATTGACTGGCTCCATGTCTCTAGGCCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGAAAAGCTGCAGCCTTTAAGATGTTTGAAACAATTGAAAGGAAGCCATTAATTGATGCCTATGACACTAATGGTCGGAAGCTTGAAGACATTCGTGGCGACATAGAGCTTAGGGAAGTCTGCTTTAGTTATCCTACAAGACCTGATGAACTGATATTCAATGGATTTTCGCTTTCAATACCGAGTGGCACTACTGCAGCTTTGGTGGGACAAAGTGGGAGTGGAAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACATTCTGGTGCAGTACTTATTGATGGTATCAATCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTGGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGAGCAACCGATGAAGAAATCAGAGCTGCGGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTACCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTGGCCATAGCAAGAGCTATTTTGAAAGACCCTAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTTGCCCACCGTTTGAGTACTATAAGGAATGCCGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACACGATGAGCTCACCAAGGATCCCGAAGGAGCCTATAGCCAGCTGATCAGACTACAAGAAATTAAGAAGTCAGAACACAACGCAGAAGAAAGAGAAAAACAAGAGAGTATATCGCATTCTGGAAGACATTCGAGCAAAAGGTCTTCTTTGTTACGATCTATAAGCCTAGAGGGAGTTGGAAACAGTGGTCGTCGTTCACTCTCAGCATCATTTGGTTTGCCTACATCTGCTGGCTTCATAGAACCCGTCGTTGAGGGGCCTGAAGATCATCCTACAACATCTCCTTCACCACCAGAAGTGCCTCTTCGTCGCCTGGGTTACCTAAACAAGCCAGAGTTTCCAGTGTTACTGATGGGGACTGTAGCTGCAGTGATAGCCGGAGCAATATTACCTGTTTTTGGACTCTTACTCTCCAAAATGATCGACATTTTCTATGAGCCACATGATGAACTTCGTAAAAACTCAAAAATTTGGGCATTAGTATTTGTGGCGGTTGGTGTGTTATCACTCCTGGTTTATCCGGCTAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCCAGAGGATCCGGAGAGCATGTTTTGAGAAAGTAGTTCACATGGAGGTAAGTTGGTTTGATGAAGCTGAGAATTCGAGTGGAGCAATTGGAGCAAGGCTCTCAACTGATGCAGCTTCCGTCAGAGCATTGGTTGGGGATGCACTTGGTTTGCTGGTTCAGAATATTGCCTCAGCAATAACTGGATTAGTAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTATGGTGCCTCTACTTGGACTAAACGGATTTCTGCAAGTCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGAGATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCGGGGAAAATGTGAAGGACCAATCAAGACGGGCATAAGGCAAGGGATAATCAGTGGAGTTAGCTTTGGAATATCATTCTTTGTGCTGTATGCAGTTTATGCAGCAAGTTTTTATGCCGGAGCTCGACTGGTAGACGGTGGCAAAACATCATTTACAGATGTTTTCCGGGTATTTTTTGCTCTCAGTTTTGCAGCTATAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAGCCAAAGCAAAAACTGCTGCTGCTTCCATATTTGCCATTATTGACCGTAAGTCACAAATAGACTCAAGTGATGACTCTGGAATAACATTGGAAGAAGTGAAGGGAGAGATTGAGCTTAAGCATGTCAGTTTCAAGTATCCTACAAGACCCGATATTCAAATATTCAGAGATCTTAGCCTGACCATTCATAGCGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTACAAAGATTCTACGATCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATCCAAAGCATGCAAGTTAAATGGCTGAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATTCGAGCCAATATTGCATATGGCAAAGGAGACGCAACTGAGACAGAGATTATAGCTGCAGCAGAATTGGCAAACGCTCACAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGGTGGTTGGTGAGAGAGGAGTTCAGTTATCTGGGGGACAGAAGCAGCGAGTGGCAATAGCACGAGCTATAGTAAAGAATCCAAAAATATTGCTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCGCTTGACCGTGTCATGGTGGACCGAACCACCATAATAGTGGCTCATAGGTTATCCACTATTAAGGGTGCTGATTTAATCGCTGTAGTTAAGAATGGGGTGATAGCAGAGAAGGGAAAGCATGAAGCATTACTGAAGAAGGGTGGTGACTATGCTTCTTTAGTTGCATTGCACACAAATGCTTCTACATCTTAG 3813 0.4369 MEGDNSLNEVTNNNQESKSRKSKDEPVKTVPLYKLFSFADSLDHLLMLVGTVGAVGNGISMPLMTLIFGSMINAFGGSSTTAEVVDEVSKVSLKFVYLAVGTFAASLLQLACWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFIGGFVVAFIKGWLLTVVMLSCIPLLVLSGALMSLVITKASSRGQTAYSKASSVVEQTIGSIRTVASFTGEKLAIAKYNQSLIKAYINGVQEAVASGLGFGMLYFVFICSYALGIWFGAKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGKAAAFKMFETIERKPLIDAYDTNGRKLEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPHSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHDELTKDPEGAYSQLIRLQEIKKSEHNAEEREKQESISHSGRHSSKRSSLLRSISLEGVGNSGRRSLSASFGLPTSAGFIEPVVEGPEDHPTTSPSPPEVPLRRLGYLNKPEFPVLLMGTVAAVIAGAILPVFGLLLSKMIDIFYEPHDELRKNSKIWALVFVAVGVLSLLVYPARFYLFGVAGGKLIQRIRRACFEKVVHMEVSWFDEAENSSGAIGARLSTDAASVRALVGDALGLLVQNIASAITGLVIAFESSWQLALIILAMVPLLGLNGFLQVKFLKGFSADAKRLYEEASQVANDAVGSIRTVASFCAEEKVMELYRGKCEGPIKTGIRQGIISGVSFGISFFVLYAVYAASFYAGARLVDGGKTSFTDVFRVFFALSFAAIGISQSGSLVPDSAKAKTAAASIFAIIDRKSQIDSSDDSGITLEEVKGEIELKHVSFKYPTRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATETEIIAAAELANAHKFISSLQKGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLKKGGDYASLVALHTNASTS 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05559 1270 MobiDBLite consensus disorder prediction 612 638 - -
Viun3g05559 1270 Gene3D ABC transporter type 1, transmembrane domain 34 618 IPR036640 GO:0005524|GO:0016020
Viun3g05559 1270 Pfam ABC transporter 1046 1194 IPR003439 GO:0005524
Viun3g05559 1270 MobiDBLite consensus disorder prediction 1 15 - -
Viun3g05559 1270 FunFam ABC transporter B family member 1 1017 1265 - -
Viun3g05559 1270 SMART AAA_5 397 583 IPR003593 GO:0016887
Viun3g05559 1270 SMART AAA_5 1054 1246 IPR003593 GO:0016887
Viun3g05559 1270 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05559 1270 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05559 1270 SUPERFAMILY ABC transporter transmembrane region 688 1007 IPR036640 GO:0005524|GO:0016020
Viun3g05559 1270 PANTHER ABC TRANSPORTER B FAMILY 9 760 IPR039421 -
Viun3g05559 1270 Gene3D - 1017 1265 IPR027417 -
Viun3g05559 1270 Gene3D - 360 609 IPR027417 -
Viun3g05559 1270 Gene3D ABC transporter type 1, transmembrane domain 688 993 IPR036640 GO:0005524|GO:0016020
Viun3g05559 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Viun3g05559 1270 FunFam ABC transporter B family member 9 34 366 - -
Viun3g05559 1270 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Viun3g05559 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1263 IPR003439 GO:0005524
Viun3g05559 1270 FunFam ABC transporter B family member 1 360 609 - -
Viun3g05559 1270 MobiDBLite consensus disorder prediction 612 631 - -
Viun3g05559 1270 CDD ABC_MTABC3_MDL1_MDL2 1027 1261 - -
Viun3g05559 1270 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Viun3g05559 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05559 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 1010 - -
Viun3g05559 1270 Gene3D ABC transporter type 1, transmembrane domain 994 1268 IPR036640 GO:0005524|GO:0016020
Viun3g05559 1270 SUPERFAMILY ABC transporter transmembrane region 34 354 IPR036640 GO:0005524|GO:0016020
Viun3g05559 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 608 IPR027417 -
Viun3g05559 1270 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Viun3g05559 1270 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Viun3g05559 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1263 IPR027417 -
Viun3g05559 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Viun3g05559 1270 FunFam ABC transporter B family member 1 685 993 - -
Viun3g05559 1270 FunFam ABC transporter B family member 9 994 1016 - -
Viun3g05559 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05559 1270 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05559 Viun-Chr3 61385981 61391859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05559 94 614 Calmodulin-binding Proteins AT2G36910 41.210 5.98e-115 388