Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05557 ATGTCAGAGGATATAGACTTGAATGGAGATTCTGAGAGGAAGCAAGATTCGAAGAGAAAGGCCAAAGATGAATCTGCCAAAACAATACCCTTATACAAACTTTTCTCATTTGCTGATTCTTTTGATCATTTATTGATGTTTGTGGGAACTGTGGGTGCTGTTGCCAATGGAATCTCCCCTCCCTTGATGACTTTGTTATTTGGAAATATGATCAATGCATTTGGAGGAACCAAAAACTCCAACGAAGTTGTTGATGAAGTTTCCAAGGTGTCTTTGGAAATTGTATACTTGGCTGTGGGAACCTGTTTTGCATCACTTTTTCAGTTAACATGTTGGATGATTACTGGGGAGAGACAAGCTGCTAGAATTAGAGGGTTATACCTTCAAACTATTTTGAGGCAAGATGTCACTTTCTTTGATAAGGAAACAAGAACAGGAGAGGTTGTCGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTAGGACAGTTCTTGCAGTTATTAGCAACTTCCGTTGGAGGTTTTGTGATAGCATTCATCAGGGGTTGGCTTCTAACTGTTGTCATGTTATCTTGTATTCCACTTATTGTTTTGTGTGGTGCCATGGTAAGCCTGGTTATTGCAAAAGCATCATCCAAGGGACAAGAAGGTTATTCCCAAGCTGCAACAGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCAACAGATAAATATAATCGGTCCTTAATCAAAGCTTACAAGGCTGGAGTGCAAGAGGCACTAGCTTCTGGTTTTGGGTTTGGTTCTCTCTCTTTTGTTTCTACCTGCAGTTATGGTTTAGCAATATGGTTTGGTGCAAAAATGATAATAGAAAAAGGATATACAGGAGGAGAGGTGGTGACAGTAATGCTTGCTGTTTTGACTGGTTCCGCGTCTCTTGGACAGGCATCTCCAAGCTTGAGTGCTTTTAGTGCTGGAAAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAGAGGAAGCCAGAAATCGATGCTTATGACACAAGTGGTCGGAAGCTTGATGACATTTGTGGACATATAGAACTAAGGGAGGTTTGCTTTAGCTATCCTACAAGACCAGACGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACGACAGCTTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCAGGTGAAGTTCTCATTGACAGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACCTGTAGTATTAAAGAGAATATTGCCTATGGAAAGGATGATGCAACTGTTGAAGAAATCAGAGCATCAGCAGAACTAGCTAATGCTGCCAAATTTATAGATAGACTTCCTCAGGGACTGGACACAATGGTTGGTGAGCATGGAACTCAGCTTTCCGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCGATTTTGAGAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTTCACTTGATGTTGAGTCTGAGAAAATTGTACAGGAAGCATTGGACAGAATAATGATAAACCGAACAACAGTCATTGTAGCCCACCGTTTAAGTACAATAAGGAATGCAGATAGCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCCCATGCCGAACTCACCAATGATCCCAGTGGAGTCTATAGCCAGCTCATTAGACTGCAGGAAATCAAAGGGTCAGAACAAAATGCTTCATATGACACAGACAAGATAGAAAGTCCAGTGCTTTCTGGTAGACAATTAAGTCAAAGATCTTCCTTACGATCTATAAGCCAAAGGTCACCAAGCAGTGGTTGCAACTCTTTCTCAGAATCACATGTTGTTCCCACAACGGTTAGCTTGGATCCTGCAGGCAGAGGATCTCAAACACTTCCTGCAACAGTTTCTTCACCACCGCAAGTGCCACTCTCTCGCCTGGCATATTTAAACAAGCCAGAGATTCCAGTCTTGTTTATAGGGACTCTAGCTGCAGTAGTAAGTGGACTATTATTACCCATTAGTGCACTATTCGTTTCCAAAATGATAAGTATTTTCTATGAGCCAGTTGATGAACTTCGTAAAGATTCAAAGCTTTGGGCATTACTATTTGTTGCAATTGGTGTGGTATCATTTATCACAGCTCCTTGTAGATTCTACTTTTTTGGTGTTGCTGGAGGTAAGTTGATCAAAAGGATTCGGAAAATGTGTTTTGAGAAAGTTGTTCACATGGAAGTTAGCTGGTTCGATGATGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCTGCTGCTGTTCGAGCTTTGGTTGGAGATGCACTTGGTTTGCTCGTTCAAAATGTTGCTACAGCTGTCGGCTGTTTGGTAATTGCTTTTCAAGCAAGCTGGCAGCTTGCTCTTATAGTGCTTGCTCTGGCACCGCTATTAGGACTAAATGGATACGTGCAATTCAAGTTCATAAAAGGATTCAGCGCAGATGCAAAGAAACTGTACGAGGAAGCAAGTCAAGTCGCAAGTGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAAAGAAGGTGATGGAATTGTACCAGAAAAAGTGTGAAGGACCAATTAAAACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTATGGGATATCATTCTTCATGCTTTACACAGTTTATGCATTCAGTTTTTATGCCGGAGCTCGACTTGTAAAGGATGGAAAATCAACATTCTCAGATGTTTTCCGTGTCCTTTTTGCACTGAGCATGGCAGCTATGGGAATCTCTCAATCTGGCTCTTTGGTCACTGATTCTGCTAAATCAAAAAGTGCTGCAGCTTCTGTATTTGCTATTCTGGACCGAAAGTCACAAATTGACCCAAGTGATGACTCTGGATTCACATTGGAAGAAGTCAACGGAGAGATTGAATTCAACAATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAAAGATCTTTGCTTGACTATTCATAGTGGCAAGACGGTTGCACTGGTTGGGGAAAGTGGAAGTGGAAAATCAACAGTGATATCATTATTGCTGAGGTTTTATGATCCAGACTCAGGTCACATCACAGTGGATGGAAAAGAAATCCAAAGCATGCAAGTAAAATGGCTAAGACAGCAGATGGGTCTGGTGAGTCAAGAGCCTGTGCTGTTTAATGACAGCATTCGAGCAAATATTGCATATGGCAAAGGTGGGGATGCAACAGAGGCAGAAGTTATAGGTGCAGCAGAACTGGCAAATGCTCACAACTTCATTAGTGGTTTGCAGGAGGGTTATGAGACAATAGTGGGGGAAAGAGGGATTCAACTATCTGGAGGGCAGAAGCAAAGGGTGGCAATTGCACGAGCAATAGTGAAGAATCCAAAAATATTACTACTAGATGAGGCCACTAGTGCCCTTGATGCAGAGTCTGAAAAAGTGGTTCAGGATGCACTAGAGCGTGTTATGGTGAACCGAACCACAATAGTAGTGGCTCATAGACTATCCACTATAAAGGGTGCGGATTTAATTGCAGTAATTAAAAATGGTGTGATAGCAGAGAAGGGAACACATGAAGCATTACTGAACAAGGAAGGTGACTATGCTTCCTCAGTTGCATTGCATACAAGTGCTTCTACATCCTAG 3807 0.4166 MSEDIDLNGDSERKQDSKRKAKDESAKTIPLYKLFSFADSFDHLLMFVGTVGAVANGISPPLMTLLFGNMINAFGGTKNSNEVVDEVSKVSLEIVYLAVGTCFASLFQLTCWMITGERQAARIRGLYLQTILRQDVTFFDKETRTGEVVGRMSGDTVLIQDAMGEKVGQFLQLLATSVGGFVIAFIRGWLLTVVMLSCIPLIVLCGAMVSLVIAKASSKGQEGYSQAATVVEQTIGSIRTVASFTGEKQATDKYNRSLIKAYKAGVQEALASGFGFGSLSFVSTCSYGLAIWFGAKMIIEKGYTGGEVVTVMLAVLTGSASLGQASPSLSAFSAGKAAAFKMFETIKRKPEIDAYDTSGRKLDDICGHIELREVCFSYPTRPDELIFNGFSLSIPSGTTTALVGESGSGKSTVVSLIERFYDPQAGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDDATVEEIRASAELANAAKFIDRLPQGLDTMVGEHGTQLSGGQKQRVAIARAILRDPRILLLDEATSSLDVESEKIVQEALDRIMINRTTVIVAHRLSTIRNADSIAVIHQGKIVEKGSHAELTNDPSGVYSQLIRLQEIKGSEQNASYDTDKIESPVLSGRQLSQRSSLRSISQRSPSSGCNSFSESHVVPTTVSLDPAGRGSQTLPATVSSPPQVPLSRLAYLNKPEIPVLFIGTLAAVVSGLLLPISALFVSKMISIFYEPVDELRKDSKLWALLFVAIGVVSFITAPCRFYFFGVAGGKLIKRIRKMCFEKVVHMEVSWFDDAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNVATAVGCLVIAFQASWQLALIVLALAPLLGLNGYVQFKFIKGFSADAKKLYEEASQVASDAVGSIRTVASFCAEKKVMELYQKKCEGPIKTGIRRGIISGIGYGISFFMLYTVYAFSFYAGARLVKDGKSTFSDVFRVLFALSMAAMGISQSGSLVTDSAKSKSAAASVFAILDRKSQIDPSDDSGFTLEEVNGEIEFNNVSFKYPTRPDVQIFKDLCLTIHSGKTVALVGESGSGKSTVISLLLRFYDPDSGHITVDGKEIQSMQVKWLRQQMGLVSQEPVLFNDSIRANIAYGKGGDATEAEVIGAAELANAHNFISGLQEGYETIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALERVMVNRTTIVVAHRLSTIKGADLIAVIKNGVIAEKGTHEALLNKEGDYASSVALHTSASTS 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05557 1268 Gene3D ABC transporter type 1, transmembrane domain 684 990 IPR036640 GO:0005524|GO:0016020
Viun3g05557 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 607 IPR027417 -
Viun3g05557 1268 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Viun3g05557 1268 SUPERFAMILY ABC transporter transmembrane region 690 1008 IPR036640 GO:0005524|GO:0016020
Viun3g05557 1268 FunFam ABC transporter B family member 1 1014 1263 - -
Viun3g05557 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 342 - -
Viun3g05557 1268 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Viun3g05557 1268 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524|GO:0016887
Viun3g05557 1268 Gene3D ABC transporter type 1, transmembrane domain 991 1265 IPR036640 GO:0005524|GO:0016020
Viun3g05557 1268 Gene3D - 1014 1263 IPR027417 -
Viun3g05557 1268 Gene3D - 359 608 IPR027417 -
Viun3g05557 1268 PANTHER ABC TRANSPORTER B FAMILY 9 610 IPR039421 -
Viun3g05557 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1024 1261 IPR003439 GO:0005524
Viun3g05557 1268 SMART AAA_5 1051 1244 IPR003593 GO:0016887
Viun3g05557 1268 SMART AAA_5 396 582 IPR003593 GO:0016887
Viun3g05557 1268 SUPERFAMILY ABC transporter transmembrane region 33 353 IPR036640 GO:0005524|GO:0016020
Viun3g05557 1268 MobiDBLite consensus disorder prediction 628 656 - -
Viun3g05557 1268 Pfam ABC transporter 1043 1192 IPR003439 GO:0005524
Viun3g05557 1268 CDD ABC_MTABC3_MDL1_MDL2 1024 1259 - -
Viun3g05557 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Viun3g05557 1268 FunFam ABC transporter B family member 9 33 365 - -
Viun3g05557 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1259 IPR027417 -
Viun3g05557 1268 FunFam ABC transporter B family member 1 682 990 - -
Viun3g05557 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05557 1268 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g05557 1268 FunFam ABC transporter B family member 1 359 608 - -
Viun3g05557 1268 Pfam ABC transporter transmembrane region 46 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05557 1268 Pfam ABC transporter transmembrane region 702 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05557 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 692 1007 - -
Viun3g05557 1268 Gene3D ABC transporter type 1, transmembrane domain 33 627 IPR036640 GO:0005524|GO:0016020
Viun3g05557 1268 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Viun3g05557 1268 FunFam ABC transporter B family member 9 991 1013 - -
Viun3g05557 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05557 Viun-Chr3 61364442 61369755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05557 20 1267 Calmodulin-binding Proteins AT2G36910 44.480 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05557 K05658 - gmx:102660078 2021.9