Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05556 ATGGTGGCTGAGGCCAGCTTGGATTCACACAAGACTTCAACTGAGATAAGAGGATCAACAAGTGATGATCCAGCAGTTCAAGGTCCTGAAAATACCCTAGAAACGGATGACAGGAACCAGGATTCTAACAGGAGCAAGGTGAAGCATGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTATTGGGATTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCGTTATGCCTTTAATGACTATACTTATTGGAGATGCTATTGATTCTTTCGGAGGAAATGCTGATAATAAACAAGAAGTAGTTCATCAAGTATCCAAGGCATCCATGAAGTTTGCAGCCATAGGCGCAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCGAGAATAAGAGGCTTATACCTGAAAGCAATATTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACTGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAGTTCATCCAGTATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTAGTGCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGCTCCATAATGAGCTTTGCTTTTGCAAAGATGGCATCCAGAGGACAAGCAGCTTATTCCGAAGCAGCAACTCTTGTGGAGCGGACAATTGGTTCAATTCGAACTGTAGCATCATTTACTGGCGAGAAGCAAGCTATAGTTCAATACAATCAATACTTAACAAAAGCTTACAGAGTGGGAGTGCAAGAGGGTTTGGCTGGTGGGTTTGGCTTTGGTTTTGTTCGTTTATTTGTTTACTGTACCTATGCTTTGACAATTTGGTTTGGAGGGAAGATGGTTATAGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACTGGCTCCATGTCTCTGGGACAGGCATCTCCAAGCTTAGCTGCATTTGCTGCAGGACAAGCAGCAGCCTTTAAAATGTTTGAAACAATAAAGAGGCAGCCAGATATTGATGCTTATGACTCTTCTGGTCAACGACTAGATGACATATCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCTGATGAACAGATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGCAGTGGGAAATCAACAGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATCGATGGCATCAATCTCAGAGAATTTCAGTTGAAATGGATCAGAGAGAAAATAGGCCTTGTCAGCCAGGAACCAGCTCTCTTTACTGGCAGCATTAAAGAGAATATTGGCTATGGAAAGGAACGGGCAACAGATGAAGAAATAAGAGCAGCAGCTGCACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGAGAGCATGGAACTCAACTCTCTGGAGGTCAAAAGCAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGCGGAATCAGAGAGAGTGGTGCAAAAGACACTAGACAGAATCATGATCAACCGAACCACCGTCATTGTAGCCCACCGTCTTAGCACAATAAGGAATGCTGATGTCATTGCAGTTATTCATCAAGGAAAAGTCATAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCGTTAGATTGCAAGAAATTAAAAGGGAATCAGAACAGAATGATACAAATTACTTAAGCAGGCCAGAAAACTTGGTAGATTCTGAACATCAACCGAGCCAACGGTATTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAGCAGCAGTCAGAACTCATTCAGAATATCAAATGCCATGCCCACCACGCAAGATCACTTTGAAGCCTCAGAAGGAGGGTCTGGAGCTTTTCCTTCAGAAGCACCACATAAACCTAAGGAAATTTCAATTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCATTGTTACTGGTGGGGACTCTGGCAGCAGCAGTAACAGGGGCAATACTACCCACCGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTTTGAGCCTGCAGATGAACTCCGGAAAGACTCAAAATTTTGGGCACTAATATTTGTTGCTCTTAGTGTGGGTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTAATAAAAAGGATCCGGCTAATGTGCTTTGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGCCGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGATGCAGCTTCTATTCGCACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACAGTAGTTACAGCCTTGGCCATTGCCTTTGACGCAAACTGGCAGCTTTCTCTCATAGTTCTTGTTTTGGTACCTCTAATAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACTGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGAAGTTATACCAGAAAAAATGTGCAGGACCCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACGGGTTTTGGGTTATCACTGTTCTTTCTGTTCTCTGTTTATGCATGCAGTTTTTATGCTGGGGCAAAACTTGTCGAGAAGGGCAAAACATCAATCTCAGACGTTTTCCGTCTATAG 3003 0.4246 MVAEASLDSHKTSTEIRGSTSDDPAVQGPENTLETDDRNQDSNRSKVKHESNKTVPFYKLFSFADYWDCLLMLVGAISAVANGIVMPLMTILIGDAIDSFGGNADNKQEVVHQVSKASMKFAAIGAGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATLVERTIGSIRTVASFTGEKQAIVQYNQYLTKAYRVGVQEGLAGGFGFGFVRLFVYCTYALTIWFGGKMVIEKGYTGGQVISVFFAVLTGSMSLGQASPSLAAFAAGQAAAFKMFETIKRQPDIDAYDSSGQRLDDISGDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIREKIGLVSQEPALFTGSIKENIGYGKERATDEEIRAAAALANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQKTLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGKVIEKGTHAELTKDPDGAFSQLVRLQEIKRESEQNDTNYLSRPENLVDSEHQPSQRYSFPQSLSRGSSGRGSSSQNSFRISNAMPTTQDHFEASEGGSGAFPSEAPHKPKEISILRIAYLNKPEIPLLLVGTLAAAVTGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVALSVGAFIFLPLRSYFFSVAGCKLIKRIRLMCFEKIIHMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVVTALAIAFDANWQLSLIVLVLVPLIVLNGHLQMKSMQGFSTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMKLYQKKCAGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGAKLVEKGKTSISDVFRL 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05556 1000 MobiDBLite consensus disorder prediction 646 688 - -
Viun3g05556 1000 FunFam ABC transporter B family member 1 386 635 - -
Viun3g05556 1000 PANTHER ABC TRANSPORTER B FAMILY 36 638 IPR039421 -
Viun3g05556 1000 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05556 1000 SUPERFAMILY ABC transporter transmembrane region 724 998 IPR036640 GO:0005524|GO:0016020
Viun3g05556 1000 MobiDBLite consensus disorder prediction 7 28 - -
Viun3g05556 1000 MobiDBLite consensus disorder prediction 1 48 - -
Viun3g05556 1000 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05556 1000 Pfam ABC transporter transmembrane region 736 998 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05556 1000 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Viun3g05556 1000 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 356 - -
Viun3g05556 1000 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Viun3g05556 1000 Gene3D - 386 635 IPR027417 -
Viun3g05556 1000 Gene3D ABC transporter type 1, transmembrane domain 59 646 IPR036640 GO:0005524|GO:0016020
Viun3g05556 1000 FunFam ABC transporter B family member 1 716 1000 - -
Viun3g05556 1000 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Viun3g05556 1000 Gene3D ABC transporter type 1, transmembrane domain 708 1000 IPR036640 GO:0005524|GO:0016020
Viun3g05556 1000 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Viun3g05556 1000 MobiDBLite consensus disorder prediction 638 688 - -
Viun3g05556 1000 MobiDBLite consensus disorder prediction 34 48 - -
Viun3g05556 1000 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1000 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05556 1000 SMART AAA_5 423 615 IPR003593 GO:0016887
Viun3g05556 1000 FunFam ABC transporter B family member 9 59 392 - -
Viun3g05556 1000 CDD ABC_6TM_Pgp_ABCB1_D2_like 726 999 - -
Viun3g05556 1000 SUPERFAMILY ABC transporter transmembrane region 59 380 IPR036640 GO:0005524|GO:0016020
Viun3g05556 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05556 Viun-Chr3 61352811 61358290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05556 73 634 Calmodulin-binding Proteins AT2G36910 38.407 6.12e-115 382