Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05550 ATGACTTCAACTGAGATGATAGCAACAAGTGATCAAACACCAGTTGAAGGATCCAAAACTACACAAGAAAAGATGGTTGGCATGATGCAAGATTCCAAGGAAAACAAGGTGAAGAATGAAACCAACAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTCAGGATAGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCTGTACGCCTTTACTGACTATATTTGTTGGAGATGCGATTGATGCTTTGGGAGGACATGCTGATAATAAACAAGTACTTCATGAAGTTTCTAAGGTGTCTCTGAAGATTGCATCCATAGGTGCAGTTGCCTTTCTAGCAGCATTCTTGCAGGTGTCTAGCTGGGTGATCACTGGAGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTGAAAGCAATATTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACTGTTCTCATTCAAGAAGCCATGGGAGAGAAGTTAGGAAAGTTCATACAGAATGTGTCAAGTTTCCTGGGAGCCATAACCTTAGCCTTCACAAAGGGTTGGCTTCTGAGCCTTGTCCTTCTATCTTCTGTTCCTCTTCTTGTCCTCTCCGGTTCCTTGATGAGCTTAGCTTTTGCAAAGATGGCATCTCGAGGACAATCAGCTTATGCTGAGGCAGCAACTGTAGTGGAGCAGACAATTGGTTCAATTCGAACTGTTGCGTCATTTACTGGTGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAACTAAAGCTTACAGAATTTCAGTGCAAGAGGGCGTGGTTAGTGGTTTTGGCTTGGGTTCATTTCAACTATTTTCGATCTGCACTTATGGTTTGGCAATATGGTTTGGGGGGAAGATGGTACTAGAGAAAGGTTACACAGGAGGACAAGTCATTGGTGTGTTTTGGACAATAATGTCTGGTTGTTTGCGTCTGGGGCAGGCATCTCCAAGTTTAAAAGCATTTTCTGCAGGAAAAGCTGCTGCCTATAAAATGTTTGAAACAATAAAGAGGCAGCCAGATATTGATGCATATGACTCTTCTGGTCAACAACTAGATGACATATCAGGAAATATAGAATTTAGGGAGGTTTGCTTTAGTTATCCATCGAGACCTGATGAACAGATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGTAGTGGGAAATCAACAGTTATTAGTTTGATTGAGAGATTTTATGATCCGCAAGACGGTGAAGTTCTCATTGATGGCATCAATATGAGAGAATTTCAGTTGAAATGGATCAGAAAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGCCTATGGTAAGGATTGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTATTAAGTTCATTGATGAATTTCCACATGGGCTTGACACAATGGTCGGCGAGCGTGGAACTCAGCTCTCTGGTGGTCAGAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAAGACCCGAGAATTCTTCTCCTTGACGAAGCCACAAGTGCTCTTGACGTAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTAGCCCATCGCTTAAGCACAATCAGGAATGCTGATATGATTGCAGTTATTCATCAAGGAAAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAATGATCCTGATGGAGCTTTAAGCCAGCTAATTAGATTGCAAGAATTTAGAAGGGAGTCAAAACAGCATGATACAAATTACACAGACCAGCAAGAAAACTTCATAGATTCTGAGCAACAATTGAACCTACAATTTTCTTTCCCTCTATCTTTAAGCCCAAGAAGAGGAAATAACAGTCATCACTCGTTCAGAATGTCAAATGCCATGCCTATCACATCAGAAAAAGGGCCTGAAGTTCTTTCTTCAGCAGCTTTGCATAAGCCTCGAGAAGTTTCTTTTGTCCGCATTGCTTATCTGAACAAACCTGAAATCCCAGTGTTACTGATGGGAACTCTAGCAGCAGCAGCAACTGGCGCATTACAACCCACTATGGGGCTTTTGCTTTCCAACATGATAAATACCTTCTTTGAGCCTGCAGATGAACTCCGTAAAAACTCAAAGTTTTGGTCATTAATATTTGTTGCCCTTGGTATCGCTGCCTTCATATTTATTCCCTTAAGGTCTTACTTCTTTGGTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATGGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGTGCTTGGAGCAAGGCTGTCAACTGATGCAGCTTCGATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGTTGATTCAAGATATCTCCACAGCATTGACAGCCCTGGTAATTGCCTTTGACGCAAACTGGCAACTTTCTCTAATCATTCTAGTTTTGGTACCACTAGTGTTACTAAATGGATACGTACAAATGAAGTCAATGCAAGGTTTCAGTACAGATGCAAAGAAACTGTATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATGAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAAGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCAATCCAGACAAGTATAAGGCTGGGTTTAATCAGCGGAGCAGGCTTCGGTTTATCAATCTTCTTTCTGTATGCTGTTAATGCCTGCGGTTATTATGTTGGAGCAAGACTGATTGAGAATGGCAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGTTATCATAATGGCAGCCATAGCAATGTCGAAATCTGGTTTCCTGACCCCAGCTGCCAGTAAAGCAAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAGTATAGATCCCGGTGATGAATCTAGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTTCACCATGTAACTTTCAAGTATCCAACCAGGCCTAATGCTCTTGTATTCAAAGATCTCTCCTTGACTATTCATGCAGGAGAGACAGTTGCTCTAGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATGCTCTCACTGTTACAGAGATTTTACGACCCAGATTCAGGTCAAATCACACTGGATGGAACAGAAGTCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTGAGCCAGGAGCCTGTGCTGTTTAATGACACCATTAGAGCTAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGTGAGAGGGATTCAACTATCCGGAGGACAGAAGCAGAGGGTAGCAATTGCAAGATCCATAGTTAAGAATCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGTGAGGGTGGATAGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAATATGGAGTCATTGCAGAGAAAGGAAAGCATGAAACTTTACTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTACATATCAGTGCTTCTTCTTCATAA 3849 0.4123 MTSTEMIATSDQTPVEGSKTTQEKMVGMMQDSKENKVKNETNKTVPFYKLFSFADSQDSLLMLVGAISAVANGICTPLLTIFVGDAIDALGGHADNKQVLHEVSKVSLKIASIGAVAFLAAFLQVSSWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKLGKFIQNVSSFLGAITLAFTKGWLLSLVLLSSVPLLVLSGSLMSLAFAKMASRGQSAYAEAATVVEQTIGSIRTVASFTGEKQAIAQYNQYLTKAYRISVQEGVVSGFGLGSFQLFSICTYGLAIWFGGKMVLEKGYTGGQVIGVFWTIMSGCLRLGQASPSLKAFSAGKAAAYKMFETIKRQPDIDAYDSSGQQLDDISGNIEFREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQDGEVLIDGINMREFQLKWIRKKIGLVSQEPVLFTGSIKENIAYGKDWATDEEIRAAAELANAIKFIDEFPHGLDTMVGERGTQLSGGQKQRISIARAILKDPRILLLDEATSALDVESERVVQETLDRIMINRTTVIVAHRLSTIRNADMIAVIHQGKLQEKGSYAELTNDPDGALSQLIRLQEFRRESKQHDTNYTDQQENFIDSEQQLNLQFSFPLSLSPRRGNNSHHSFRMSNAMPITSEKGPEVLSSAALHKPREVSFVRIAYLNKPEIPVLLMGTLAAAATGALQPTMGLLLSNMINTFFEPADELRKNSKFWSLIFVALGIAAFIFIPLRSYFFGVAGSKLIKRIRLMCFEKIIHMEMGWFDKAENSSGVLGARLSTDAASIRTLVGDALGLLIQDISTALTALVIAFDANWQLSLIILVLVPLVLLNGYVQMKSMQGFSTDAKKLYEEASQVANDAVGNMRTVASFCAEEKVMELYQKKCLGPIQTSIRLGLISGAGFGLSIFFLYAVNACGYYVGARLIENGKASFSDVFRVFYVIIMAAIAMSKSGFLTPAASKAKCSVASIFAILDQKSSIDPGDESRMTLQEVKGEIEFHHVTFKYPTRPNALVFKDLSLTIHAGETVALVGKSGSGKSTMLSLLQRFYDPDSGQITLDGTEVQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKNPKILLLDEATSALDAESERMVQDALDRVRVDRTTIVVAHRLSTIKDADSIAVVEYGVIAEKGKHETLLNKGGTYASLVALHISASSS 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05550 1282 MobiDBLite consensus disorder prediction 1 20 - -
Viun3g05550 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 613 IPR027417 -
Viun3g05550 1282 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524|GO:0016887
Viun3g05550 1282 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Viun3g05550 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 358 - -
Viun3g05550 1282 Gene3D - 383 636 IPR027417 -
Viun3g05550 1282 Gene3D - 1028 1276 IPR027417 -
Viun3g05550 1282 Gene3D ABC transporter type 1, transmembrane domain 109 969 IPR036640 GO:0005524|GO:0016020
Viun3g05550 1282 Coils Coil 622 642 - -
Viun3g05550 1282 SUPERFAMILY ABC transporter transmembrane region 704 1022 IPR036640 GO:0005524|GO:0016020
Viun3g05550 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Viun3g05550 1282 FunFam ABC transporter B family member 1 375 624 - -
Viun3g05550 1282 PANTHER ABC TRANSPORTER B FAMILY 31 626 IPR039421 -
Viun3g05550 1282 Pfam ABC transporter 1057 1206 IPR003439 GO:0005524
Viun3g05550 1282 FunFam ABC transporter B family member 1 1028 1277 - -
Viun3g05550 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 1021 - -
Viun3g05550 1282 Pfam ABC transporter transmembrane region 63 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05550 1282 Pfam ABC transporter transmembrane region 716 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05550 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05550 1282 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Viun3g05550 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Viun3g05550 1282 SUPERFAMILY ABC transporter transmembrane region 49 367 IPR036640 GO:0005524|GO:0016020
Viun3g05550 1282 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Viun3g05550 1282 CDD ABC_MTABC3_MDL1_MDL2 1038 1273 - -
Viun3g05550 1282 Gene3D ABC transporter type 1, transmembrane domain 984 1027 IPR036640 GO:0005524|GO:0016020
Viun3g05550 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g05550 1282 SMART AAA_5 1065 1258 IPR003593 GO:0016887
Viun3g05550 1282 SMART AAA_5 412 584 IPR003593 GO:0016887
Viun3g05550 1282 FunFam ABC transporter B family member 9 49 381 - -
Viun3g05550 1282 FunFam ABC transporter B family member 1 696 1004 - -
Viun3g05550 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1275 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05550 Viun-Chr3 61331585 61337042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05550 38 625 Calmodulin-binding Proteins AT2G36910 38.617 2.71e-114 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05550 K05658 - gmx:100777713 1967.2