Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05544 ATGGATGTGGAGGACTGGGATTTGAGTGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCCTTCTTCTCCACACCAACATCACAATTCTTCAACTGCAACAATGAATCACTTCCCATCAAACCCCCTTCCCAATTCGCGTCCCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAGCATTGCCCACGTCATTGAAATCAGGGACAGGGACAGACAACGACAAACAATCCAAAAATGGACTGGTAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAATTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGAAAAATCTCTAAATCTTCTTGGAATGCAAAGGAACGGTTATGGGTATTCCCACTGTCTTCCTTGTCGGAGGCGGAGAAGTTTCTTGGAGAAGTATCAGGTTATAATGTTCAGGTTGAAAACTTAGATCCCTTGGTGCAACGTGCCATTGCTGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGTTACTGCAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGGCGTGTTCTCTTAGCAGATGAAATGGGACTGGGGAAAACATTGCAAGCCATTGCTGTAGCTTCATGCATTCAGGAGTCTTGGCCTGTTCTCATAATTGCACCATCTTCACTGCGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTAATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATTGTATCTTCAAGTTCTAAAAACAGCATTCGTCTGAATGGACTATTCAACATCATCTCATACGAGTTGGTGCCAAAGCTACAGAATTTGCTTACGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAAGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCAGACCAATTGAACTATTCAAGCAGTTGGAAGCTTTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATGAAGGCTACAGTGCTGATTCGTAGGCTTAAACATGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGAGAGTTGGAAATGGTAAAAGCCAAAATTAAGGTTGCTAAATCACAAGAGGAGGCAGAATCGCTCAAGTTTACTCAAAAGACTATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTCCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCGATACATGAGTTTCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCTTCCAGACAGCAATTGGTCACTGAGTTTCAGGAAAAAGATTCTGTTAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATCTGGGACAGATGTTAGACGGTCATGAAAAGGCCTTGGAGGTCGCTCAGAGTAGCCCTTCAAAGCAGAAAACTCTGGACCAGTATATTAGAAGACCTGAAAACTTGGATAGCCCTTCAAAGCAGAAAACACTAGACCAGTTTGTTAGAAGATGTGATAACATGGAAGGGTTGGAACATGAGCACAACCCCAAACGTCCCCGAAACTGA 2112 0.419 MDVEDWDLSAEDLDSLERDAFQKIAQLRNPPPPSSPHQHHNSSTATMNHFPSNPLPNSRPQTVGASSQGARALPTSLKSGTGTDNDKQSKNGLVKFSVKFFLHSSGNIAAKFQYDQVVVAAFRKISKSSWNAKERLWVFPLSSLSEAEKFLGEVSGYNVQVENLDPLVQRAIAAASAVPDLQDRYCKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSSKNSIRLNGLFNIISYELVPKLQNLLTTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKHDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKVAKSQEEAESLKFTQKTIINKIYTDSAEAKIPSVLDYLGTVIEAGSKFLIFAHHQPMIDSIHEFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSVKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVAQSSPSKQKTLDQYIRRPENLDSPSKQKTLDQFVRRCDNMEGLEHEHNPKRPRN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05544 703 MobiDBLite consensus disorder prediction 648 679 - -
Viun3g05544 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 377 IPR014001 -
Viun3g05544 703 CDD SF2_C_SNF 492 616 - -
Viun3g05544 703 Pfam Helicase conserved C-terminal domain 500 605 IPR001650 -
Viun3g05544 703 CDD DEXHc_HARP_SMARCAL1 196 419 - -
Viun3g05544 703 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 689 - -
Viun3g05544 703 FunFam Chromatin remodeling factor18 454 699 - -
Viun3g05544 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 648 IPR027417 -
Viun3g05544 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 419 IPR027417 -
Viun3g05544 703 FunFam Chromatin remodeling factor18 169 443 - -
Viun3g05544 703 MobiDBLite consensus disorder prediction 38 88 - -
Viun3g05544 703 ProSiteProfiles HARP domain profile. 90 166 IPR010003 -
Viun3g05544 703 MobiDBLite consensus disorder prediction 661 679 - -
Viun3g05544 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 648 IPR001650 -
Viun3g05544 703 SMART helicmild6 522 605 IPR001650 -
Viun3g05544 703 Pfam SNF2-related domain 214 472 IPR000330 GO:0005524|GO:0140658
Viun3g05544 703 Coils Coil 448 468 - -
Viun3g05544 703 Gene3D - 462 690 IPR027417 -
Viun3g05544 703 SMART ultradead3 192 385 IPR014001 -
Viun3g05544 703 Gene3D - 168 425 IPR038718 -
Viun3g05544 703 MobiDBLite consensus disorder prediction 17 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05544 Viun-Chr3 61287277 61298955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05544 476 625 RAD5 or RAD16-like Gene Family AT1G05120 30.519 8.09e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g05544 SNF2_N 6.6e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05544 K14440 - gmx:100778246 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05544 3 61287277 61298955 Viun3g05544 3 61287277 61298955 ECH