Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05540 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTAGAATCGTCTGACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAACAAAGGTTAATTTTTGCTGGTAAACAACTCGAGGATGGGAGAACCCTTGCCGATTACAATATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGATTAAGAGGTGGTATGCAGATTTTTGTGAAGACTTTAACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAGCAGAGGCTTATTTTTGCTGGTAAACAACTGGAGGATGGAAGGACCCTTGCCGATTACAATATTCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGTTTGAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTCGAGAGTTCAGATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGGAAACAGCTTGAAGATGGAAGAACTCTTGCGGATTATAATATCCAGAAGGAATCTACCCTGCACCTGGTTTTGAGGCTTCGTGGTGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTCAGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTACAACATCCAGAAAGAATCTACCCTGCACCTGGTTTTGAGGCTTCGTGGTGGAATGCAATTGGAAGAAGGTCGTACCTTGGCAGACTACAATATTCAGAAAGAATCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGCCTTTGAACGTTTTCCTCTTGTTGTATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCTGATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCCCCGGATCAGCAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAACATTCAAAAGGAGTCCACGCTCCACTTGGTGCTTCGTTTGAGGGGTGGCATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACACTTGCGGATTATAACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTTGAAAGTTCTGATACCATTGATAATGTAAAGGCAAAGATCCAGGACAAAGAGGGTATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAACATCCAGAAGGAATCTACTCTGCACCTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACATTCAGAAGGAATCCACCCTCCACCTTGTCCTTCGCCTTCGCGGTGGCTTCTAACTTTTTCACTTTTCACCAACTATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCTGATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAGCAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAACATTCAAAAGGAGTCCACGCTCCACTTGGTGCTTCGTTTGAGGGGTGGCATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCTGATACCATTGACAATGTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACACTTGCTGATTATAACATCCAGAAGGAATCCACTCTTCATTTGGTGTTAAGGCTTCGTGGGGGTATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATCCCACCTGATCAACAGAGGCTTATCTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAATATTCAGAAGGAATCTACCCTGCACCTTGTCCTTCGCCTTCGCGGTGGTTTCTAA 2880 0.4531 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQLEEGRTLADYNIQKESTLHLVLRLRGGLXTFSSCCMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFXLFHFSPTMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05540 959 CDD Ubl_ubiquitin 494 569 - -
Viun3g05540 959 CDD Ubl_ubiquitin 731 806 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 596 621 IPR019954 -
Viun3g05540 959 SMART ubq_7 229 300 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 342 413 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 655 726 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 731 802 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 418 489 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 494 565 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 1 72 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 807 878 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 570 641 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 77 148 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 153 224 IPR000626 GO:0005515
Viun3g05540 959 SMART ubq_7 883 954 IPR000626 GO:0005515
Viun3g05540 959 FunFam Polyubiquitin 3 731 806 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 681 706 IPR019954 -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Viun3g05540 959 CDD Ubl_ubiquitin 1 76 - -
Viun3g05540 959 FunFam Polyubiquitin 3 570 645 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 520 545 IPR019954 -
Viun3g05540 959 FunFam Polyubiquitin 3 77 152 - -
Viun3g05540 959 Gene3D - 649 730 - -
Viun3g05540 959 Gene3D - 77 152 - -
Viun3g05540 959 Gene3D - 494 569 - -
Viun3g05540 959 Gene3D - 807 882 - -
Viun3g05540 959 Gene3D - 570 647 - -
Viun3g05540 959 Gene3D - 337 417 - -
Viun3g05540 959 Gene3D - 418 493 - -
Viun3g05540 959 Gene3D - 883 959 - -
Viun3g05540 959 Gene3D - 229 304 - -
Viun3g05540 959 Gene3D - 731 806 - -
Viun3g05540 959 Gene3D - 153 228 - -
Viun3g05540 959 Gene3D - 1 76 - -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 806 882 IPR029071 -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 418 493 IPR000626 GO:0005515
Viun3g05540 959 FunFam Polyubiquitin 3 883 958 - -
Viun3g05540 959 CDD Ubl_ubiquitin 807 882 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 757 782 IPR019954 -
Viun3g05540 959 FunFam Polyubiquitin 3 655 730 - -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 303 335 IPR029071 -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 570 645 IPR000626 GO:0005515
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 418 493 IPR029071 -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 650 730 IPR029071 -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Viun3g05540 959 FunFam Polyubiquitin 3 494 569 - -
Viun3g05540 959 CDD Ubl_ubiquitin 418 493 - -
Viun3g05540 959 Pfam Ubiquitin family 885 956 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 344 415 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 572 643 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 657 728 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 420 491 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 496 567 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 809 880 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 304 331 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Viun3g05540 959 Pfam Ubiquitin family 733 804 IPR000626 GO:0005515
Viun3g05540 959 Gene3D - 305 333 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 883 958 IPR000626 GO:0005515
Viun3g05540 959 FunFam Polyubiquitin 3 342 417 - -
Viun3g05540 959 PRINTS Ubiquitin signature 32 52 IPR019956 -
Viun3g05540 959 PRINTS Ubiquitin signature 53 74 IPR019956 -
Viun3g05540 959 PRINTS Ubiquitin signature 11 31 IPR019956 -
Viun3g05540 959 CDD Ubl_ubiquitin 229 304 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Viun3g05540 959 FunFam Polyubiquitin 3 418 493 - -
Viun3g05540 959 FunFam Polyubiquitin 3 807 882 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 731 806 IPR000626 GO:0005515
Viun3g05540 959 FunFam Polyubiquitin 3 1 76 - -
Viun3g05540 959 CDD Ubl_ubiquitin 883 958 - -
Viun3g05540 959 CDD Ubl_ubiquitin 342 417 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 368 393 IPR019954 -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 569 645 IPR029071 -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 909 934 IPR019954 -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Viun3g05540 959 CDD Ubl_ubiquitin 153 228 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 75 152 IPR029071 -
Viun3g05540 959 CDD Ubl_ubiquitin 655 730 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 730 806 IPR029071 -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 494 569 IPR000626 GO:0005515
Viun3g05540 959 CDD Ubl_ubiquitin 570 645 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 301 333 IPR000626 GO:0005515
Viun3g05540 959 FunFam Polyubiquitin 3 153 228 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 807 882 IPR000626 GO:0005515
Viun3g05540 959 FunFam Polyubiquitin 3 229 304 - -
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 444 469 IPR019954 -
Viun3g05540 959 PANTHER UBIQUITIN 304 334 - -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Viun3g05540 959 CDD Ubl_ubiquitin 77 152 - -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 655 730 IPR000626 GO:0005515
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 341 417 IPR029071 -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 882 958 IPR029071 -
Viun3g05540 959 ProSiteProfiles Ubiquitin domain profile. 342 417 IPR000626 GO:0005515
Viun3g05540 959 ProSitePatterns Ubiquitin domain signature. 833 858 IPR019954 -
Viun3g05540 959 SUPERFAMILY Ubiquitin-like 493 569 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05540 Viun-Chr3 61253897 61269546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05540 883 959 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.76e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05540 K08770 - mtr:25493109 1717.98