Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05539 ATGGAGGACAATTTTGCATTCAAAAAATTGCTGCAAGATCACAAAAAACCATGTGTTAGTACCACAGATGCACTCAACTGGAATCAGGAATCATCCATTAGAAACACTCTAGGATCTACTCTTCTTGGTTTGAGTCTGAATAACTTGGAGCTTCCGAAAAATCTTGAGCAAGAGCCTCTGAACCAATTGGGATTGTTGCAAGTTGAGCTGGAGGAGGTGAAGAAGGAGAATCAAAATTTAAGGTCAATGCTTAATGAGATCAGTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGCGATGCAGCAAAAGAAACTATCTTCATCACCTCCCAATAATGAGGACATGCAGAAGGATAGCAGGCAAGATAACGTGAAGAAGCCATGGCAGTTCTTACACACTGGTAAAATGAATAACCAAGTAACAGCAGAAGAAGCAAAAATCATAGAAGATCAGGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCTGTAAGAGCACGATCAGAATCTATGAAGGGTGATGGTTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGTAACCCTTGTCCTCGGGCCTACTATCGTTGCAACATGGGAACAACATGTCCAGTTCGCAAACAGGTTCAGAGGTGTGCTTCGGATGAAAGTGTTGTGATCACAACCTACGAGGGGACTCATAATCATTCACTCCCTCCACCAGCCAGATCCATGGCTTCCACAACATCAGCAGCACTGAGCATGTTCCTTTCTGGCTCAACCACTACTTCAAATCATCAACTCTTCTCTTCTACCTACTATCCATCTGCATCATCATGTCCCACTGTAACACTCGACTTAACCCACCCCACTAAGAACAACCTCAACCATTCTCAAACTTTCCCTCTTTCACTCAACGGTTACCCTCAGCAGTGTGAGGGATTAGCCTCAGAGAAAGACCTTCCCTTGGTCCATGTTCTTAGTGCTGCCATCACCAGGGATCCTTCTATTAGGGCAGCATTAGAAGCAGCCGTTTCCTCTATGATTGCAGATTCTCAGAACACCAGTAGCCATGCCCAACTTAGTACCACTCCTTATCACCCTTCTTCTTAG 1101 0.4387 MEDNFAFKKLLQDHKKPCVSTTDALNWNQESSIRNTLGSTLLGLSLNNLELPKNLEQEPLNQLGLLQVELEEVKKENQNLRSMLNEISEHYAALQNQLLLAMQQKKLSSSPPNNEDMQKDSRQDNVKKPWQFLHTGKMNNQVTAEEAKIIEDQAFEASCKKARVSVRARSESMKGDGCQWRKYGQKISKGNPCPRAYYRCNMGTTCPVRKQVQRCASDESVVITTYEGTHNHSLPPPARSMASTTSAALSMFLSGSTTTSNHQLFSSTYYPSASSCPTVTLDLTHPTKNNLNHSQTFPLSLNGYPQQCEGLASEKDLPLVHVLSAAITRDPSIRAALEAAVSSMIADSQNTSSHAQLSTTPYHPSS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05539 366 Coils Coil 63 104 - -
Viun3g05539 366 Pfam WRKY DNA -binding domain 176 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05539 366 MobiDBLite consensus disorder prediction 105 125 - -
Viun3g05539 366 Gene3D WRKY domain 159 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05539 366 SMART WRKY_cls 174 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05539 366 SUPERFAMILY WRKY DNA-binding domain 172 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05539 366 ProSiteProfiles WRKY domain profile. 169 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05539 366 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 56 355 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05539 Viun-Chr3 61241677 61245546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05539 147 284 WRKY Transcription Factor Family AT4G04450 60.390 1.62e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g05539 WRKY 2.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05539 - - var:108340459 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00560 9 4207272 4212499 Viun3g05539 3 61241677 61245546 PCT