Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05538 ATGGAGGACAATTTTGCATTCAAAAAATTGCTGCAAGATCACAAAAAACCATGTGTTAGTACCACAGATGCACTCAACTGGAATCAGGAATCATCCATTAGAAACACTCTAGGATCTACTCTTCTTGGTTTGAGTCTGAATAACTTGGAGCTTCCGAAAAATCTTGAGCAAGAGCCTCTGAACCAATTGGGATTGTTGCAAGTTGAGCTGGAGGAGGTGAAGAAGGAGAATCAAAATTTAAGGTCAATGCTTAATGAGATCAGTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGCGATGCAGCAAAAGAAACTATCTTCATCACCTCCCAATAATGAGGACATGCAGAAGGATAGCAGGCAAGATAACGTGAAGAAGCCATGGCAGTTCTTACACACTGGTAAAATGAATAACCAAGTAACAGCAGAAGAAGCAAAAATCATAGAAGATCAGGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCTGTAAGAGCACGATCAGAATCTATGGGTGATGGTTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGTAACCCTTGTCCTCGGGCCTACTATCGTTGCAACATGGGAACAACATGTCCAGTTCGCAAACAGGTTCAGAGGTGTGCTTCGGATGAAAGTGTTGTGATCACAACCTACGAGGGGACTCATAATCATTCACTCCCTCCACCAGCCAGATCCATGGCTTCCACAACATCAGCAGCACTGAGCATGTTCCTTTCTGGCTCAACCACTACTTCAAATCATCAACTCTTCTCTTCTACCTACTATCCATCTGCATCATCATGTCCCACTGTAACACTCGACTTAACCCACCCCACTAAGAACAACCTCAACCATTCTCAAACTTTCCCTCTTTCACTCAACGGTTACCCTCAGCAGTGTGAGGGATTAGCCTCAGAGAAAGACCTTCCCTTGGTCCATGTTCTTAGTGCTGCCATCACCAGGGATCCTTCTATTAGGGCAGCATTAGAAGCAGCCGTTTCCTCTATGATTGCAGATTCTCAGAACACCAGTAGCCATGCCCAACTTAGTACCACTCCTTATCACCCTTCTTCTTAG 1098 0.439 MEDNFAFKKLLQDHKKPCVSTTDALNWNQESSIRNTLGSTLLGLSLNNLELPKNLEQEPLNQLGLLQVELEEVKKENQNLRSMLNEISEHYAALQNQLLLAMQQKKLSSSPPNNEDMQKDSRQDNVKKPWQFLHTGKMNNQVTAEEAKIIEDQAFEASCKKARVSVRARSESMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTTCPVRKQVQRCASDESVVITTYEGTHNHSLPPPARSMASTTSAALSMFLSGSTTTSNHQLFSSTYYPSASSCPTVTLDLTHPTKNNLNHSQTFPLSLNGYPQQCEGLASEKDLPLVHVLSAAITRDPSIRAALEAAVSSMIADSQNTSSHAQLSTTPYHPSS 365
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05538 365 Coils Coil 63 104 - -
Viun3g05538 365 SMART WRKY_cls 173 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05538 365 MobiDBLite consensus disorder prediction 105 125 - -
Viun3g05538 365 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05538 365 Gene3D WRKY domain 158 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05538 365 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 56 354 IPR044810 GO:0003700
Viun3g05538 365 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05538 365 SUPERFAMILY WRKY DNA-binding domain 168 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun3g05538 Viun-Chr3 61241676 61245546 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05538 147 283 WRKY Transcription Factor Family AT4G04450 59.740 3.23e-56 188
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g05538 WRKY 2.5e-22 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05538 - - var:108340459 525.398