Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05532 ATGGGGACATTAGAGGAAATCGATGCTCCTCATACCCAGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCATCCTTCTAGAACTCCACCACCCTCTTCGTCCCCTTCATCGAGTGTGTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTCAGCATATCTCCTTCATCTCAATCTGAACCACCTTTCAATTCAACACCAAGGGAGGAGAGTTTCAACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTCAGCCAGAAACCCTCTTTATTTGTGAAAGTCTACATGGAAGGAATCCCCATCGGAAGAAAATTAAATCTGATGGCACATTATAGCTATGACGGACTAGTGAAAACTCTAGGCCATATGTTTAGGACCACCATTCTGTGTCCAAACTCTCAGCCACTCGGTTCTGGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGTTGAAGATCACGAGAGCTGACAGATGCTAG 582 0.4553 MGTLEEIDAPHTQSSSSSSSSIDSNNHPSRTPPPSSSPSSSVCRNRTDLSTDLRLGLSISPSSQSEPPFNSTPREESFNWPPIKSILRSTLVGKQSHLSQKPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPLGSGNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05532 193 ProSiteProfiles PB1 domain profile. 103 192 IPR000270 GO:0005515
Viun3g05532 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 191 IPR003311 GO:0005634|GO:0006355
Viun3g05532 193 SUPERFAMILY CAD & PB1 domains 96 187 - -
Viun3g05532 193 MobiDBLite consensus disorder prediction 1 77 - -
Viun3g05532 193 Pfam AUX/IAA family 66 189 IPR033389 -
Viun3g05532 193 Gene3D - 97 193 - -
Viun3g05532 193 MobiDBLite consensus disorder prediction 8 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05532 Viun-Chr3 61171610 61173525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05532 107 187 B3 DNA Binding Superfamily AT4G23980 38.272 3.41e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun3g05532 AUX_IAA 1.7e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05532 K14484 - gmx:100818083 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05532 3 61171610 61173525 Viun3g05532 3 61171610 61173525 ECH