Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05515 ATGGCTGGTGTGAACACTCTCCCAGTAGAAGGGTGGAAGCTTTTTCCTTCTTCTGCTATGGAGATTGCTCTTGACAGTGACGATGGAAGGAGTGAGAACATGGAGGTCCACAACACCATAACTGATGATTCCTCTATGCATTTCTCTGCTACCAGGCCAGTGCCATCATCTGGACCCATCAAAGTGATTCCTAATCCAACCAAGTTTACCATCCTCTATAAGGGGAACATGTGTGTTTATGAAGGAATTCCTGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGGTCCCTTGGACTTCACTCATTTCAAAAAGTGCTTCTTCTCTTCTGGGAAACTCTACTGATTCTGCAAAGAAGAGTTCCATTCGAAGGCTGCAAGATGAATTTCCTCTTGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAACAAAGCACCTTACATTTCAACTAAAAACTTGGCTCACAGCATAGAGAACAACTTCTGCACTGAAATGTCACATTTTGGTTCCTTGAACTATCCGAAGAGGAATTTCAACCCGGTGTTGCCGCCTCTTTAA 615 0.4374 MAGVNTLPVEGWKLFPSSAMEIALDSDDGRSENMEVHNTITDDSSMHFSATRPVPSSGPIKVIPNPTKFTILYKGNMCVYEGIPAEKVREIMLIASVSAKSAEMKSGVPWTSLISKSASSLLGNSTDSAKKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKAPYISTKNLAHSIENNFCTEMSHFGSLNYPKRNFNPVLPPL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05515 204 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 46 170 IPR040390 -
Viun3g05515 204 Pfam Jas motif 142 166 IPR018467 -
Viun3g05515 204 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Viun3g05515 204 SMART tify_2 62 97 IPR010399 -
Viun3g05515 204 Pfam tify domain 64 96 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05515 Viun-Chr3 61051567 61054022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05515 16 166 Tify Gene Family AT5G20900 32.075 4.42e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun3g05515 tify 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05515 K13464 - gmx:100306282 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05515 3 61051567 61054022 Viun9g00549 9 4087077 4090894 PCT