Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05506 ATGGCTGTTTCTCCAGTCAGATATCGTTCCACCCTCGCATTCTCCTTCTGCTGCCTTTTCTTTCTCGCACTCTGCACCCCTCTCACCGCCGCCACAGATTTCGCCGGTTCAGCCTGCCTCGGGGTCTCCCCCACCCAGTTCGCCGGCTCAGTCACCCAACTCATCACTGCCATCAAACAACTCACCTCCATTCTCTCACGCTTCTCCACACCATTCGCCGACTTCCGCCTCGCCACTGCCATCGCCGACTGCCTCGACTTGTTCGACATCTCCTCCGACGTTCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAAGCATAACAGCACGGGGAACCTGAGCTCCGATTTGAGGACATGGCTAAGTGCGGTACTTTCGCATCCACAAACTTGCTTGGAGGGATTCGAAGGGACGAACGGCATTGTGAAGAGTTTGGTATCGGCTGGCATCGGCGAAGTGGTGTCGTTGGTGGAAGAGCTTCTTGCGCAGGTGGTGCCCGTAAACGATGAATTTGACGCCAGGAAGGAGCAATTTCCTTCGTGGGTTAAACCCAGGGAAAGGAAGCTTCTTCAATCGATTGGAGTGACTCCTGATGCTGTGGTAGCTTTGGATGGGAGTGGGAACTACGGTAGGATCATGGATGCGGTGCTTGCGGCACCTGATTATAGCATGAAACGGTATGTGATTTACATAAAGAAAGGTGTTTATTTTGAGAACGTGGAGATCAAGAAAAAGAAATGGAACATCATGATTGTTGGAGATGGGATGGACGCCACCGTCATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACCTTCCGCTCATCTACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGACATTTCCTTTCAGAACACGGCAGGGCCTGAGAAGCACCAAGCAGTGGCGCTGAGATCAGACTCAGACCTATCTGTGTTCTACCGATGTGGGATTTTGGGTTTCCAAGACAGCCTCTACACCCACACCATGCGCCAATTCTTCAGAGAATGCAGAGTAACAGGCACGGTGGACTTCATCTTCGGCGACGCCACCGCCGTGTTCCAGAACTGCTTAATACAACCGAAGAAGGGCTTGCCAAATCAGAAGAACACGATCACAGCACACGGTAGAAAAGACCCAAATGAGCCAACGGGTTTCTCGTTCCAGTTCTGCAACATCACTGCAGACTCCGACCTCGCACCCCTCGTCAACACCACTCAAACGTATCTGGGCAGACCCTGGAAGACTTACTCACGAACCGTTTTCATGCAATCGTTCATGAGTGAGGTGATAAGAGCAGAGGGGTGGTTGGAGTGGAATGGAGATTTTGCTTTGGACACGCTGTATTATGCAGAGTACCTGAACACTGGCTCAGGTGCCGGCGTAGCGAACCGTGTGAAATGGAAAGGGTACCATGCATTCAATGATTCCAGCCAGGTGAGTAACTTCACAGTGGCTCAGTTTATTGAGGGGAATCTGTGGTTGCCTTCCACTGGAGTAACCTACACTGCTGCATTCAAAGTCTAA 1542 0.5214 MAVSPVRYRSTLAFSFCCLFFLALCTPLTAATDFAGSACLGVSPTQFAGSVTQLITAIKQLTSILSRFSTPFADFRLATAIADCLDLFDISSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAVLSHPQTCLEGFEGTNGIVKSLVSAGIGEVVSLVEELLAQVVPVNDEFDARKEQFPSWVKPRERKLLQSIGVTPDAVVALDGSGNYGRIMDAVLAAPDYSMKRYVIYIKKGVYFENVEIKKKKWNIMIVGDGMDATVISGNRSFIDGWTTFRSSTFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGILGFQDSLYTHTMRQFFRECRVTGTVDFIFGDATAVFQNCLIQPKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLAPLVNTTQTYLGRPWKTYSRTVFMQSFMSEVIRAEGWLEWNGDFALDTLYYAEYLNTGSGAGVANRVKWKGYHAFNDSSQVSNFTVAQFIEGNLWLPSTGVTYTAAFKV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05506 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 167 IPR035513 -
Viun3g05506 513 PANTHER PECTINESTERASE 51 501 - -
Viun3g05506 513 Pfam Plant invertase/pectin methylesterase inhibitor 57 149 IPR006501 GO:0004857
Viun3g05506 513 Gene3D - 194 511 IPR012334 -
Viun3g05506 513 FunFam Pectinesterase 194 511 - -
Viun3g05506 513 CDD PMEI-like_4 14 170 - -
Viun3g05506 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 160 IPR035513 -
Viun3g05506 513 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Viun3g05506 513 SMART PMEI_2 30 165 IPR006501 GO:0004857
Viun3g05506 513 SUPERFAMILY Pectin lyase-like 197 508 IPR011050 -
Viun3g05506 513 Pfam Pectinesterase 200 497 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05506 Viun-Chr3 60944224 60948343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05506 16 511 Carbohydrate Esterase AT3G43270 61.793 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05506 K01051 - gmx:100814987 853.973