Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05505 ATGGCTATTCCTAAACTTTTCCTCCTTCTTTTGGCATTCTTCTTCTCACATGCCGTAGCTGTTAAGTCCTCCAATGCTTTTACAACCCCAACATTCCATGCAAACCACTCTTCCTTAAATAGAACAAACTTATTTCATGATGTAAGCTTCGATTCATCTAAGCTTTCTATCTCGATAAACATAAATCCAAACATCATCAACACCCTTCTTCAGTCCCTCCAAGCAGCAATATCTGATGCCACAAAACTATCTGATCTATTAAACAATGCAGGACACTCAAGCATCACAGAGAACAAAATAGGAGCAGTCCAAGACTGCAGAGAACTTCAACAATCCACCTTAGCTTCCTTACAACGATCGCTATCAGGGATCCGTTCCCAAGACTCCAGAAAAGTAGTTGATGCAAGAACCTACCTCAGTGCAGCCCTCACCAACAAAGGCACGTGTCTAGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTGGTGAATTCTGTGATCAACTCTTACAAGCATGTCAGTGACTCTCTTTCAATGCTCCCTAAGCCAGAGAAGAAGGCTTTCCAAGGACACAAGAACAGGCGTTTGTTGTGGCTGTCAAGGGCAAACCACCGGCTCCTGAAAGGCAACGATGGGGTGCTTGTTGTAGCTGCAGATGGAACGGGGAAGTTCAGCACCATCACTGAGGCTATCAACTTTGCTCCAAACAACAGCGTCGGTAGGACAGTAATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTCACTGTTATCACCGGCAGCAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTCTGGCGGTCTCTGGAGAGGGTTTTCTTGCACGTGATATTGGTTTCGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCGCTGAGAGTGAATGCAGATTTCACTGCTTTTTACAGATGTGCCATGTATGGTTACCAAGACACTCTTTATGTTCATTCCTTTAGACAGTTCTACAGAGAGTGTGAGATTTTTGGAACCATAGATTACATATTTGGGAATGCAGCGGTGGTTTTACAAGCATGCAACATTGTGTCTAGAATGCCAATGCCAGGCCAATTCACTGTCATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACCGGTATTTCAATCCAAAACTGCTCCATTCTAGCTACCACAGACCTGTACTCTGATTCTGGTAGTGTCAAGAGCTACCTAGGAAGACCGTGGAGGGTTTATTCTCGTACTGTGTATCTTGAATCCTACATCGATGCATTTATTGAGGCAGAGGGGTGGACCCGGTGGTCCAATGACGAAGGCTTGGACACTTTGTATTATGGAGAGTATTCCAATTATGGGCCTGGTTCGGGGACTGATAACAGAGTAGATTGGGCTGGGTACCATTTAATGGATTACGACAGTGCCTACAACTTCTCAGTTTCGGAATTTATCATTGGTGACGCTTGGCTAGGGTCTACATCATTCCCTTATGACAATGGGATTTAA 1578 0.4487 MAIPKLFLLLLAFFFSHAVAVKSSNAFTTPTFHANHSSLNRTNLFHDVSFDSSKLSISININPNIINTLLQSLQAAISDATKLSDLLNNAGHSSITENKIGAVQDCRELQQSTLASLQRSLSGIRSQDSRKVVDARTYLSAALTNKGTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEKKAFQGHKNRRLLWLSRANHRLLKGNDGVLVVAADGTGKFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDVTVITGSRSVIDGWTTFRSATLAVSGEGFLARDIGFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECEIFGTIDYIFGNAAVVLQACNIVSRMPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSDSGSVKSYLGRPWRVYSRTVYLESYIDAFIEAEGWTRWSNDEGLDTLYYGEYSNYGPGSGTDNRVDWAGYHLMDYDSAYNFSVSEFIIGDAWLGSTSFPYDNGI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05505 525 Pfam Plant invertase/pectin methylesterase inhibitor 72 181 IPR006501 GO:0004857
Viun3g05505 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 184 IPR035513 -
Viun3g05505 525 FunFam Pectinesterase 32 184 - -
Viun3g05505 525 CDD PMEI-like_3 69 187 - -
Viun3g05505 525 PANTHER PECTINESTERASE 63 515 - -
Viun3g05505 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 182 IPR035513 -
Viun3g05505 525 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Viun3g05505 525 Gene3D - 213 525 IPR012334 -
Viun3g05505 525 Pfam Pectinesterase 216 511 IPR000070 GO:0030599|GO:0042545
Viun3g05505 525 SUPERFAMILY Pectin lyase-like 214 522 IPR011050 -
Viun3g05505 525 FunFam Pectinesterase 211 525 - -
Viun3g05505 525 SMART PMEI_2 16 181 IPR006501 GO:0004857
Viun3g05505 525 NCBIfam pectinesterase inhibitor domain 57 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05505 Viun-Chr3 60941368 60943285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05505 37 525 Carbohydrate Esterase AT2G26440 64.902 0.0 662