Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05504 ATGGCGTTTCAGGATTTTGACCTCATCTCAGAGCGGCGGAGAAATGAGAAGAAGCAAAGGATGAGGAAGAGGATCATGATCGGCGTGGTTTCTACCATCGTCCTCGTCGGCATGATCGGTGCAGTTCTCTTCGTCGTGGTTAAGAATGATGACACTGGAAATGGCAATGGCAATACCAATGCCAATGCCAAGAGCACCAACAAGGCACGTACTAGCCATTCACCACCTGCAAAGGCTGAAGATGACTCCCCCAAGGGGGAGGTGGCGCACACGGAGAAGCTAGTGAAAATGGTGTGCAGCTCCGCTGATTTCAAGGACAAGTGTGAGGAGCCTCTGAACAAGGCCATGGAGAAAGACTCCAAGCTCTCCGAACCCAAAGACCTTCTCAAGGCCTACGTGAAGCTCGCAGAGGAAGAGGTTTCCAAGGCCTTCAACAAGACCAATACGATGAAGTTCGACACTGATGAAGAGAAAGGAGCGTTCGAGGATTGCAAGAAGCTGTTTGAGGATGCCAAGGATGACATCGCAACCACCATCTCTGAACTATCCAAAACTGAGCTAAAAAATGTCACTGACAAGAGTCCCGATCTCAACAGCTGGCTCAGTGCTGTCATCTCCTTCCAACAGACCTGCATTGATGGCTTCCCCGAGGGAAACATCAAGACTGAACTTCAAAATCTCATGAACGATTCCAAGGAATTCATCAGCAACTCCCTTGCCATTATCTCTCAGCTCGCATCGGCTCTTTCTACATTCGAAACAGCCGCCAACGCCGCCTCATCATCCGGCCGATCCTTGCTTTCTCAGTTCTCCAACTCCCCCGCCGCTTCTCTCGACCCAGCCGATGACTTTCCCTATTGGCTCCCCAACGATGACCGCAGGATCTTGAAGGCCGTCGACAACAAACCTGCACCTAATGTCACCGTCGCAAAAGATGGCAGCGGAAAATTCAAAACCATCAACGAAGCTGTCAATGCTATCCCTGAAAAGTTTGAAGGACGGTATGTGATTTACGTCAAAGAAGGAATATACGACGAGATAGTGAAGATTACAAAGAAAATGGTAAACATAACCATGTACGGTGATGGATCCCAAAAGACCATCGTCACCGGCAACAAAAACTTCAGGGACGGAGTGAGGACTTTCCTCACTGCAACTTTTGTGGTGGAGGGAGAGGGATTCATAGGCATGGCAATGGGTGTGAGAAACACCGCAGGGCCTGACGGGCATCAAGCAGTGGCGGCGAGAGTGCAGGCAGATCGTGTGGTGTTTGCGAACTGTCGTTTCGAGGGGTACCAAGACACTCTATACACCCATGCTCACAGACAATTCTACAGGAGTTGCATCGTGACGGGGACAATCGACTTCATCTTCGGCGATGCGGCGGTGGTGCTCCAGAACTGCATCCTGATCGTGAGGAAGCCAAACGACAACCAGCAGAACATGGTGACGGCTCAGGGGAGAGTGGACAAGCAGCAAGCGACTGGAATTGTGCTGCAGAGGTGCACAATCAAAGCCGACGAGGCACTGATCCCGGTGAAGAGCAAGATCAGGAGCTACCTCGGAAGGCCATGGAAGGAGTACTCCAGAACCATTGTGATGGAATCAGAAATCGGTGACGTCATTCACCCTGATGGATGGACAGCTTGGAACGGTGATTTCGCTCTCAAAACGTTGTACTATGCTGAGTTCGAGAACACAGGACCCGGTGCTTCCACCTCCGCCAGGGTGAAATGGCCTGGTTACAAAACCATCACCAAGGATGAGGCTACCCAGTTCACCCCTGGCGTTTTCTTGAGAGGCTCATGGGTTCAGAGCACGGGAGTGCCCTCTACGCAAGGCTTGTACAATTAA 1854 0.5119 MAFQDFDLISERRRNEKKQRMRKRIMIGVVSTIVLVGMIGAVLFVVVKNDDTGNGNGNTNANAKSTNKARTSHSPPAKAEDDSPKGEVAHTEKLVKMVCSSADFKDKCEEPLNKAMEKDSKLSEPKDLLKAYVKLAEEEVSKAFNKTNTMKFDTDEEKGAFEDCKKLFEDAKDDIATTISELSKTELKNVTDKSPDLNSWLSAVISFQQTCIDGFPEGNIKTELQNLMNDSKEFISNSLAIISQLASALSTFETAANAASSSGRSLLSQFSNSPAASLDPADDFPYWLPNDDRRILKAVDNKPAPNVTVAKDGSGKFKTINEAVNAIPEKFEGRYVIYVKEGIYDEIVKITKKMVNITMYGDGSQKTIVTGNKNFRDGVRTFLTATFVVEGEGFIGMAMGVRNTAGPDGHQAVAARVQADRVVFANCRFEGYQDTLYTHAHRQFYRSCIVTGTIDFIFGDAAVVLQNCILIVRKPNDNQQNMVTAQGRVDKQQATGIVLQRCTIKADEALIPVKSKIRSYLGRPWKEYSRTIVMESEIGDVIHPDGWTAWNGDFALKTLYYAEFENTGPGASTSARVKWPGYKTITKDEATQFTPGVFLRGSWVQSTGVPSTQGLYN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05504 617 CDD PMEI-like_3 98 247 - -
Viun3g05504 617 MobiDBLite consensus disorder prediction 53 89 - -
Viun3g05504 617 NCBIfam pectinesterase inhibitor domain 89 245 IPR006501 GO:0004857
Viun3g05504 617 SMART PMEI_2 90 241 IPR006501 GO:0004857
Viun3g05504 617 SUPERFAMILY Pectin lyase-like 303 614 IPR011050 -
Viun3g05504 617 Gene3D Invertase/pectin methylesterase inhibitor family protein 91 248 IPR035513 -
Viun3g05504 617 PANTHER PECTINESTERASE 42 605 - -
Viun3g05504 617 FunFam Pectinesterase 300 615 - -
Viun3g05504 617 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 93 245 IPR035513 -
Viun3g05504 617 Pfam Pectinesterase 306 601 IPR000070 GO:0030599|GO:0042545
Viun3g05504 617 ProSitePatterns Pectinesterase signature 2. 450 459 IPR033131 -
Viun3g05504 617 MobiDBLite consensus disorder prediction 53 73 - -
Viun3g05504 617 MobiDBLite consensus disorder prediction 74 89 - -
Viun3g05504 617 Gene3D - 300 615 IPR012334 -
Viun3g05504 617 Pfam Plant invertase/pectin methylesterase inhibitor 94 241 IPR006501 GO:0004857
Viun3g05504 617 FunFam Pectinesterase 91 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05504 Viun-Chr3 60938537 60941118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05504 1 617 Carbohydrate Esterase AT2G26450 48.499 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05504 - - vun:114177564 1183.32