Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05501 ATGGCATCATGGAAAGTTTTTAACCAATGCTTGCTTCTGCCAATGTTGCTGATGAATTGCTTTGTTTTGCTGGTTCAATGTGGTAGGCCACATTACACAGAAGGAGAAGATTTGGTCACAGCAACCTGCAAACACACCCTTCATTTCCAAGTATGCAATTCTTCCCTAAGATCAGTCCCTAGTAGTAGCAACACATCAGATCTCAGAGTGCTTGCTGAGATAGCACTGAATCTCAGCACAGCATATGCTGCAGACACTTTGACCTGTGTTCATGAACTGCAATCCAATTCTTCCGCTGCTAATAACATTTATTTGTTCCGTTGCTTAAGAGACTGTGAAGAGGAATTCTCGGAAGCCATAGAGAACTTGCAGGACTCAAAAGAAGCACTTGCCAATGGAGATTGTGACAGAGTGGATACATTGGTTTCTGCTGCTATGTCTGATGCCGAGACATGTGAGGATGGCTTCAAGGACTTGCAAAGTGAGGACAATTATTCAACTTCTCTAGCTGAACGTAACCGTTACTTCTCTGAACTATGTAGTAATGCTCTTGCTATCACAAAATTACTAGTTTGA 576 0.4219 MASWKVFNQCLLLPMLLMNCFVLLVQCGRPHYTEGEDLVTATCKHTLHFQVCNSSLRSVPSSSNTSDLRVLAEIALNLSTAYAADTLTCVHELQSNSSAANNIYLFRCLRDCEEEFSEAIENLQDSKEALANGDCDRVDTLVSAAMSDAETCEDGFKDLQSEDNYSTSLAERNRYFSELCSNALAITKLLV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05501 191 CDD PMEI-like_1 38 190 - -
Viun3g05501 191 Coils Coil 109 129 - -
Viun3g05501 191 Pfam Plant invertase/pectin methylesterase inhibitor 37 186 IPR006501 GO:0004857
Viun3g05501 191 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 190 IPR035513 -
Viun3g05501 191 SMART PMEI_2 34 186 IPR006501 GO:0004857
Viun3g05501 191 FunFam Invertase/pectin methylesterase inhibitor family protein 34 191 - -
Viun3g05501 191 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 191 IPR035513 -
Viun3g05501 191 PANTHER PECTINESTERASE INHIBITOR-LIKE 25 190 - -
Viun3g05501 191 NCBIfam pectinesterase inhibitor domain 15 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05501 Viun-Chr3 60928390 60929349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05501 38 188 Carbohydrate Esterase AT1G53830 27.215 2.30e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05501 - - gmx:100785210 286.574