Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05470 ATGAAGGCTCCATCCAATAGTTTCTTGCCTAATTCTGGCGAAGGGGAAAGGAAGATGATAAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTGTCTCTACCTCCTGTTGGAAGTCTTGTGGTGTACTTCCCCCAAGGACACAGCGAACAAGTTGCAGCTTCCATGCAAAAGGAGACCGATTTCATTCCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATTCTGGCATCAGACATGGGTCTGAAACAAAACCGTCAACCTACTGAGTTCTTCTGCAAAACACTTACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTCTGGACTATTCAATGCAACCTCCTGCTCAGGAGCTTGTAGCCAAGGATTTGCATGATAATACATGGCCATTTAGACATATTTATAGGGGACAACCAAAGAGGCATCTCTTAACTACAGGTTGGAGTGTATTTGTAAGCACAAAAAGACTGCTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAACCAGCACTGTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTCACTATATTTTACAATCCAAGGGCAAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTACAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAATCTGGAGTACGCAGATATATGGGGACAATAACTGGGATCACTGACTTGGATCCTGTCCGATGGAAAAACTCACAATGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCCAGCAGAGTTTCAATCTGGGAAATAGAACCAGTAGTTACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGAGGAGTCAGATATGGAGAATGCTTTCAAGAGAGGTATGCCCTGGCTTGGAGATGAGTTTGGCATGAAGGATGCATCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTTCAGTGGATGAGCATGCAACCCAATAATCAGCTTTCAGCGGCTCAATCAGGATGTTACCCATCCATGCTTCCATCTAATACCCTTCAGGGTAACCTTCCCACCGAAGACCCATCCAAGTTATTGAACTTTCAAGCTCCTGTTCTCTCTTCCCCAACTCTTCAATTAAACAAACCCAATCTACCAAATCAAATCAACCAGTTGCAACAGCCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAACAGCAGCAACAACAACAACAGCTGCAGCAGCAGCAGCAACAACAGCAGCTACAGCAACAACAACAGCTGCAGCAACAACAGCAGCAGCAACTACAGTCATTATTGCAAATACCAATGAACCATCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAGCCACAGAACCTGCCATTGCTGCAGCAAATGCCTCAACAGCTAGGACAGCAGCCCCAGAAACAGCAACAGCAGAGTCAACATGCTAGTCTTATGAATAATGGGGTAGTTTCTTCTAACCAGATTACAAGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAGCAACAATTACTCTCAGGAGGTATCCAAACCCAGCAAGGTATTCAGTCAGCTAGTAAGAATACATTCCCATTGACATCCTTACCGCATGATTCACAATTTCAACAACAGATAGACCAACAAGCTAACCTCTTACTGAGGCAACAACAACAACAACAACAGCAGACACAGTTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGATAGCACCACAACAACAACCGCCTGCCACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAGTTTCTACAGAAATTGCAGCACCAACAGCAACAGCAACTTCTTTCTACGTCCACCCCACTATTGCAGCCTCAGCTTCTACCACAACAAAATACTCACCAACAAAACCAGCAATTACCACAGCCCCCACCACCTATATCACATCACCAGCCTCAACAGCTTGTCAATAATGCATGTTCAACAGAGAAGCTTCTCAGCAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAACAGAATCCTATGAGCCAATCCCAGAATACACAGAAATCACTTACCACCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAATTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCCCCATTAGGAGGGAGTTTGATGGTAGAGCCCACTAGTAATCTGTTACAGGATCTTCACAGCAAGCCTGACGTGCAAAGCAAACATGAGTTGCTCAATCTAAAAGGACCTGACCAGTTGAAGTATAAAGGGGCAATCACCGATCAGATGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACTATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGTTGGTGCTCCTAGAGACATTGAAACAGAGCTGTCAACTGCTGACCTCAGTTCCCAGTCGTTTGGAGTGCCAAACATACCTTTCAAGCCTAGTTGCTCAAGTGATGTTGTCATCAACGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGGCAACCAACCTCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGTATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCATCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCACATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCCATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTAA 3432 0.447 MKAPSNSFLPNSGEGERKMINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDEESDMENAFKRGMPWLGDEFGMKDASSSIFPGFSLVQWMSMQPNNQLSAAQSGCYPSMLPSNTLQGNLPTEDPSKLLNFQAPVLSSPTLQLNKPNLPNQINQLQQPPVSWPQQQQLQQQQQQQQQLQQQQQQQQLQQQQQLQQQQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQMPQQLGQQPQKQQQQSQHASLMNNGVVSSNQITSQFVQPPMAYGQLQQQQLLSGGIQTQQGIQSASKNTFPLTSLPHDSQFQQQIDQQANLLLRQQQQQQQQTQLQQSPLQLLQQNLPQIAPQQQPPATQMLQQNPSEQQLHLQFLQKLQHQQQQQLLSTSTPLLQPQLLPQQNTHQQNQQLPQPPPPISHHQPQQLVNNACSTEKLLSSNNFSSSSLMQSQQNPMSQSQNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPAPLGGSLMVEPTSNLLQDLHSKPDVQSKHELLNLKGPDQLKYKGAITDQMEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYVGAPRDIETELSTADLSSQSFGVPNIPFKPSCSSDVVINETGVLNNSGLRGNQPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRYDLAKMFGIEGQLDHQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNR 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05470 1143 ProSiteProfiles PB1 domain profile. 1016 1099 IPR000270 GO:0005515
Viun3g05470 1143 SMART B3_2 126 228 IPR003340 GO:0003677
Viun3g05470 1143 CDD B3_DNA 125 226 IPR003340 GO:0003677
Viun3g05470 1143 Gene3D - 289 360 - -
Viun3g05470 1143 FunFam Auxin response factor 124 228 - -
Viun3g05470 1143 Gene3D - 123 227 IPR015300 -
Viun3g05470 1143 MobiDBLite consensus disorder prediction 774 832 - -
Viun3g05470 1143 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 583 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun3g05470 1143 FunFam Auxin response factor 289 361 - -
Viun3g05470 1143 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Viun3g05470 1143 SUPERFAMILY CAD & PB1 domains 1029 1094 - -
Viun3g05470 1143 MobiDBLite consensus disorder prediction 1120 1143 - -
Viun3g05470 1143 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g05470 1143 Gene3D - 1012 1104 - -
Viun3g05470 1143 MobiDBLite consensus disorder prediction 733 755 - -
Viun3g05470 1143 MobiDBLite consensus disorder prediction 774 843 - -
Viun3g05470 1143 MobiDBLite consensus disorder prediction 469 492 - -
Viun3g05470 1143 FunFam Auxin response factor 1011 1104 - -
Viun3g05470 1143 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Viun3g05470 1143 Coils Coil 493 536 - -
Viun3g05470 1143 Pfam AUX/IAA family 1014 1102 IPR033389 -
Viun3g05470 1143 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05470 Viun-Chr3 60648321 60655068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05470 1 490 B3 DNA Binding Superfamily AT5G20730 79.960 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g05470 AUX_IAA 3.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05470 K14486 - gmx:100816054 1651.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05470 3 60648321 60655068 Viun3g05470 3 60648321 60655068 ECH