Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05465 ATGATGCAACCCTCTCTCTACCATCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCGGCTGCAGGTGCCCTTGAAGGATGCAAGCTTATCAGGAAAGAGAAGTCATCCTATGGTTTTGTGGACTACTTCGATCGGAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAACCTATTAAGGTTAACTGGGCTTATGCAAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTTGGTGACCTTAGTCCTGAGGTCACAGATGCGACGTTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAAACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGGGCCAGTGCAAGTGATGAAAAACAGAGTTCGGATTCCAAAAGTGTCGTGGAGTTGACTAATGGAACATCAGAAGAAGGCCTGGAAATAACCACTGATGATGCCCCCGAGAAGAATCCTCAATATACCACGGTTTATGTTGGCAATCTTGCTCCTGAGGTCACTTCTGTTGATCTCCATCACCATTTTCATTCACTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCAATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATAAAGTGTTCATGGGGTAGCAAACCCACTCCTCCAGGAACTGCCTCTACTCCTCTTCCCCCTCCTACTTCTGCAAATGTGCCTGGTTTTTCTCTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTTCTGCATCAGCAAGGACAGCATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCAGGGGCTGGTTATGATGCAAGGTTTCAGAACGTTGCTACCACCCAGCACCTAATGTACTATCAGTAA 1206 0.461 MMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSAAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKSVVELTNGTSEEGLEITTDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSANVPGFSLASLAAYERQMALSKMGGAHALLHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05465 401 Gene3D - 223 320 IPR012677 -
Viun3g05465 401 Gene3D - 115 214 IPR012677 -
Viun3g05465 401 FunFam oligouridylate-binding protein 1-like isoform X2 119 214 - -
Viun3g05465 401 SUPERFAMILY RNA-binding domain, RBD 234 321 IPR035979 GO:0003676
Viun3g05465 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 224 317 - -
Viun3g05465 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 110 IPR000504 GO:0003723
Viun3g05465 401 SUPERFAMILY RNA-binding domain, RBD 25 114 IPR035979 GO:0003676
Viun3g05465 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 316 IPR000504 GO:0003723
Viun3g05465 401 MobiDBLite consensus disorder prediction 199 238 - -
Viun3g05465 401 FunFam Oligouridylate-binding protein 1C 219 320 - -
Viun3g05465 401 MobiDBLite consensus disorder prediction 199 227 - -
Viun3g05465 401 SUPERFAMILY RNA-binding domain, RBD 114 203 IPR035979 GO:0003676
Viun3g05465 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 104 IPR000504 GO:0003723
Viun3g05465 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 310 IPR000504 GO:0003723
Viun3g05465 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Viun3g05465 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Viun3g05465 401 Gene3D - 23 114 IPR012677 -
Viun3g05465 401 SMART rrm1_1 37 106 IPR000504 GO:0003723
Viun3g05465 401 SMART rrm1_1 122 195 IPR000504 GO:0003723
Viun3g05465 401 SMART rrm1_1 243 312 IPR000504 GO:0003723
Viun3g05465 401 CDD RRM2_PUB1 120 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05465 Viun-Chr3 60606349 60610916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05465 28 316 Eukaryotic Initiation Factors Gene Family AT1G49760 29.568 9.41e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05465 K13201 - gmx:100813736 773.852