Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05463 ATGTCGACCTCCTCGGAGTATTCAGGATTTTCCGGTAACCGGCCGGCGAAGACGCCGGCGGACAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGTCAATACCTGAAGGAAAAGGGTACCTTCGGAGACCTTACTCTCGGGATGACATGCACCGCCGAAGCAAACGGTTCTTCTTCTGAAGCATCGTGCCACCCTCCAACAACCATGGAGTTGTTTCCCACCATCTTGACACAACGGAACCCTTCTGCTGCTGTGGATTTCTTCTCTCCGGAGCCTGCTTATCCTCACCGCTCAGAGCTTCCAACTTTGGTGAATATGTCAAGTGGTTTCAGGTCTGTGGAGAAGGAGCCTAAACCTGCTCCAATGACAATCTTTTATGCTGGACAAGTGATTGTGTTTAATGATTTTCCCCCTGAAAAAATGGAGGAGATAATGGCACTGGCAAGCAAGGGAATGTCCCAAAGCCCAAACTACCAGGCATATGCTCACACTAGAAACCAGCAAGGAAATCATACTTCCTTTGTTGCTAATGTCCCCCCTCAATCACCCTCCATACCAATTGTCCGAGATCTTCCAATTGCGAGGAAAGTTTCACTTCATCGGTTCTTCGAGAAGAGAAAACATAGAATTGCTGCCAATGCGCCATATCAAACAAACAATCTCAACTCTGTTTCAAATAAGCATGCCGCAGAATCCATTCCATGGCTTGGATTTGGTGTTCCATCAAAACAAATCTGA 741 0.4723 MSTSSEYSGFSGNRPAKTPADKSTFSQTCSLLSQYLKEKGTFGDLTLGMTCTAEANGSSSEASCHPPTTMELFPTILTQRNPSAAVDFFSPEPAYPHRSELPTLVNMSSGFRSVEKEPKPAPMTIFYAGQVIVFNDFPPEKMEEIMALASKGMSQSPNYQAYAHTRNQQGNHTSFVANVPPQSPSIPIVRDLPIARKVSLHRFFEKRKHRIAANAPYQTNNLNSVSNKHAAESIPWLGFGVPSKQI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05463 246 Pfam tify domain 117 150 IPR010399 -
Viun3g05463 246 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g05463 246 Pfam Jas motif 193 218 IPR018467 -
Viun3g05463 246 SMART tify_2 116 151 IPR010399 -
Viun3g05463 246 ProSiteProfiles Tify domain profile. 116 151 IPR010399 -
Viun3g05463 246 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 228 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05463 Viun-Chr3 60595178 60597430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05463 1 240 Tify Gene Family AT1G19180 42.578 2.05e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun3g05463 tify 4.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05463 K13464 - gmx:100527510 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05463 3 60595178 60597430 Viun3g05463 3 60595178 60597430 ECH