Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05461 ATGGCCGCTGTTCGCCTATTCTTCTTCTTCCTCCTCCTCCTCCTCCTCTCCCTCCTCCCTCTCTCCCATCCTCAAACGGATAACCAAGCTCTCCTCAACCTAAAAAAATCCTTCTCCGACCCCCAAACCCTCTCCTCCTGGGTCCCCGACCAGAACCCTTGCGCCGCCCGTTGGGTGGGCGTCATTTGCTCCAACAACGTCATCAACAGCCTCCATCTCACCGACCTCTCCCTCTCCGGCATCATAGACATCGAAGCCCTCACCCAGATCCCCTCTCTCCGCTCCATCAGCCTCGTCAACAACTCCTTCGCCGGCCCCATTCCCCCCTTCAGCAAACTCGGAGTCCTCAAAGCCATCTACCTGACCAACAACAAGTTCTCCGGCCCCATCCCCTCCGACTTCTTCTCCCACTTAGCCTCCTTGAAGAAAATATGGCTCGACAACAACAAATTCTCCGGCCCCGTCCCGGAATCCTTAACCACCCTCCGCTACCTCTCCGAGCTCCATCTCGAGAACAACGAGTTCTCCGGCCCCATCCCCGAACTCAAACAGGACATCAAATCCCTCGACTTCTCCAACAACAAGCTCCAAGGCCCAATCCCACCCTCCATGTCGCGCTTCGAAGCCAAATCCTTCTCCGGCAACGTAGAACTCTGCGGGCAGCCGCTGGATAAACCGTGTGAGTCCGCGGCCAGTGAAGGCTCCGGTTGGGGATTGAAGGTGGTTGTTCTCATCTTCATTGCCGCTGTTCTCGCCGGGGTTTTTGTCATGGCGCGATCCAAGCGTCAACGCGACGATGACTTCAGCGTCATGAGCAGGGATAACGCGGAGGAAGTGGTGCAGGTGCACGTGCCAAGCTCCAACCACAGCAAGGGAACCTCCGAAGGGAGCAGGAAGGAGTCGACGTCGTCCAAGAAAGGGGTGGGGCGGAGTATTGGCGACCTCGTGATGGTGAACGATGAGAGGGGCACGTTTGGGTTGCCTGATTTGATGAAGGCTGCGGCGGAGGTTCTCGGAAACGGTGGGTTGGGTTCGGCGTACAAAGCCTCCATGGCTAGTGGGTTGTCTGTGGTGGTAAAGCGGATGCGGGAGATGAATAAAGTGAGCAGAGACATCTTCGACGCCGAGATGAGACGCTTTGGGAGACTCAGAAACCCTAACATCTTGACGCCTCTCGCTTACCATTACCGCAAGGAGGAGAAGCTGTACGTGACAGAATATATGCCCAAAGGAAGCTTGTTATACGTCTTGCACGGTGACAGAGGATCGAGTCATTCGGACCTGAACTGGCCAATCCGTTTGAAAATTGTGAAGGGAATAGCACGAGGGTTAGGGTTTCTGTATAAAGAATTTTCTACCGAAGAGCTGCCACATGGGAACCTGAAATCAAGCAATGTTCTGCTAACTCAGAATTACGAAGCTCTCCTGAGCGATTTCGCCTTTCATCCTCTGATCAACCACAACTACGCCGTACAGACATTGTTTGCGTACAAAACTCCAGATTACGTAACACACCAGCGTGTGACACAGAAAACCGACGTTTACTGCCTGGGAATCATCGTTCTTGAGGTGATCACCGGGAAATTCCCTTCTCAGTATCACAGCAATGGCAAGGGTGGCACCGACGTGGTGCACTGGGTGCTCACTGCAATCTCCGACAGAAGAGAAGCGGAGTGTATTGATCCAGAGTTGAAGAGCACTCACTCTAACTCCCTGAATCAAATGCTGCAACTTCTCCAAATAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTTCAGGTTTAA 1827 0.538 MAAVRLFFFFLLLLLLSLLPLSHPQTDNQALLNLKKSFSDPQTLSSWVPDQNPCAARWVGVICSNNVINSLHLTDLSLSGIIDIEALTQIPSLRSISLVNNSFAGPIPPFSKLGVLKAIYLTNNKFSGPIPSDFFSHLASLKKIWLDNNKFSGPVPESLTTLRYLSELHLENNEFSGPIPELKQDIKSLDFSNNKLQGPIPPSMSRFEAKSFSGNVELCGQPLDKPCESAASEGSGWGLKVVVLIFIAAVLAGVFVMARSKRQRDDDFSVMSRDNAEEVVQVHVPSSNHSKGTSEGSRKESTSSKKGVGRSIGDLVMVNDERGTFGLPDLMKAAAEVLGNGGLGSAYKASMASGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNPNILTPLAYHYRKEEKLYVTEYMPKGSLLYVLHGDRGSSHSDLNWPIRLKIVKGIARGLGFLYKEFSTEELPHGNLKSSNVLLTQNYEALLSDFAFHPLINHNYAVQTLFAYKTPDYVTHQRVTQKTDVYCLGIIVLEVITGKFPSQYHSNGKGGTDVVHWVLTAISDRREAECIDPELKSTHSNSLNQMLQLLQIGAACTESNPDQRLNMKEAIRRIEEVQV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05461 608 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Viun3g05461 608 SUPERFAMILY L domain-like 26 207 - -
Viun3g05461 608 MobiDBLite consensus disorder prediction 280 308 - -
Viun3g05461 608 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Viun3g05461 608 Pfam Protein kinase domain 336 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05461 608 FunFam Nuclear pore complex protein NUP107 24 181 - -
Viun3g05461 608 Gene3D Ribonuclease Inhibitor 185 229 IPR032675 -
Viun3g05461 608 SUPERFAMILY Protein kinase-like (PK-like) 336 603 IPR011009 -
Viun3g05461 608 Gene3D Transferase(Phosphotransferase) domain 1 409 608 - -
Viun3g05461 608 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Viun3g05461 608 ProSiteProfiles Protein kinase domain profile. 332 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05461 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 607 IPR046959 -
Viun3g05461 608 Gene3D Phosphorylase Kinase; domain 1 338 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05461 Viun-Chr3 60575106 60577675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05461 1 608 Receptor kinase-like Gene Family AT3G42880 50.863 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun3g05461 Pkinase 8.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05461 - - vum:124828555 1102.04