Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05450 ATGACAATCGGATGGGGTTCGATCTTCTCTAGTTGTTTCAGGAGTGAGTCTGTCTCTCCTTCTCCCAAGCCCACCACCAAAGAGGTGGCTACAAAGGGTGGCTCTTCTTCCAACAGGGTCTCCATCATGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTATCCGTTTCTTTAGTTGGGTCTAATCTCCATGTTTTTTCACTCGCCGAGCTCAAGATCATCACACAGAGTTTCTCTTCGAGTAACTTTTTAGGAGAAGGAGGTTTTGGACCTGTCCACAAGGGCTTCATTGATGACAAGGTTAGGCCTGGCCTCGAGGCTCAGCCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCACAAAGAGTGGTTGACGGAAGTTGTGTTTCTGGGTCAACTGAGGCATCAACATCTGGTGAAGTTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAATATCTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCGGGAGCTGCAAAGGGTCTAGCCTTTCTACACGAAGCAAAAAAACCAGTCATTTATAGAGATTTCAAAGCTTCAAACATACTGTTAGACTCTGATTATAATGCAAAGCTCTCTGATTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTGATGGGCACACAGGGGTATGCGGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTATACAGTTTTGGAGTTGTTCTATTGGAGATTCTAACAGGAAGAAGATCAGTGGACAAAGGGCGCCCCCCAAGAGAACAAAATCTGGTGGAATGGGCCAGACCTGTTCTGAATGATCCCCGGAAACTGGGTCGAATAATGGATCCAAGACTTGAGGGACAGTATTCTGAGGTAGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCACAGGCCAAGAAGCAGACCCTTGATGAGCACTGTGGTTAGTGTTCTTGAGCCTCTTAAGGACTTCGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCTACTGATCATAATGAAACGCCAAAAGAGGTTGAAACACCAAAGGATAGGAAGAGGGATCATCACAAGAACGGTCATAGACATCATGATCACGATGAGGCCAATAAAGATGCAAATGGTCACCATCACCACCACCGAAATCGTCGCCACAATAGGCCTCATCCACTTAAATCACCCAAGACACCAGTTTCATCATCAGAGTCACACAATAGTGAACACCGAAATGCTAGAAGAAGTGGCTCAAATTCACCTGATACCCCCATTGCATCAGAAGCACAAGGAAGCATGGCCTAG 1419 0.4637 MTIGWGSIFSSCFRSESVSPSPKPTTKEVATKGGSSSNRVSIMDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEILTGRRSVDKGRPPREQNLVEWARPVLNDPRKLGRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVSVLEPLKDFDDVPIGPFVYTVPTDHNETPKEVETPKDRKRDHHKNGHRHHDHDEANKDANGHHHHHRNRRHNRPHPLKSPKTPVSSSESHNSEHRNARRSGSNSPDTPIASEAQGSMA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05450 472 Pfam Protein tyrosine and serine/threonine kinase 84 355 IPR001245 GO:0004672|GO:0006468
Viun3g05450 472 MobiDBLite consensus disorder prediction 372 472 - -
Viun3g05450 472 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Viun3g05450 472 FunFam Probable serine/threonine-protein kinase PBL8 163 372 - -
Viun3g05450 472 MobiDBLite consensus disorder prediction 401 415 - -
Viun3g05450 472 MobiDBLite consensus disorder prediction 416 431 - -
Viun3g05450 472 MobiDBLite consensus disorder prediction 455 472 - -
Viun3g05450 472 MobiDBLite consensus disorder prediction 14 36 - -
Viun3g05450 472 MobiDBLite consensus disorder prediction 380 394 - -
Viun3g05450 472 ProSiteProfiles Protein kinase domain profile. 80 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05450 472 CDD STKc_IRAK 86 360 - -
Viun3g05450 472 FunFam Serine/threonine-protein kinase BIK1 49 162 - -
Viun3g05450 472 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Viun3g05450 472 PANTHER OS01G0588500 PROTEIN-RELATED 38 361 - -
Viun3g05450 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Viun3g05450 472 Gene3D Phosphorylase Kinase; domain 1 49 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05450 Viun-Chr3 60471516 60473863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05450 66 357 Glycoside Hydrolase AT3G07070 54.576 6.07e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g05450 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05450 - - gmx:100799411 781.556